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Establishment of

naional laboratory-based surveillance

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© World Health Organizaion 2011

All rights reserved. Requests for publicaions, or for permission to reproduce or translate WHO publicaions, whether for sale or for noncommercial distribuion, can be obtained from Publishing and Sales, World Health Organizaion, Regional Oice for South-East Asia, Indraprastha Estate, Mahatma Gandhi Marg, New Delhi-110 002, India (fax: +91-11-23370197; e-mail: publicaions@ searo.who.int).

The designaions employed and the presentaion of the material in this publicaion do not imply the expression of any opinion whatsoever on the part of the World Health Organizaion concerning the legal status of any country, territory, city or area or of its authoriies, or concerning the delimitaion of its froniers or boundaries. Doted lines on maps represent approximate border lines for which there may not yet be full agreement.

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All reasonable precauions have been taken by the World Health Organizaion to verify the informaion contained in this publicaion. However, the published material is being distributed without warranty of any kind, either expressed or implied. The responsibility for the interpretaion and use of the material lies with the reader. In no event shall the World Health Organizaion be liable for damages arising from its use.

This publicaion contains the collecive views of an internaional group of experts and does not necessarily represent the decisions or the stated policy of the World Health Organizaion.

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Contents

Introducion

1. 1

Surveillance of animicrobial resistance

2. 3

Establishing a naional surveillance system

3. 5

Selecion of organisms for surveillance

4. 8

Selecion of animicrobial agents 1

5. 3

Protocols for animicrobial suscepibility tesing 1

6. 7

Quality control of animicrobial suscepibility tesing 2

7. 2

Troubleshooing for disc difusion tests 2

8. 6

Data collecion analyses and disseminaion 3

9. 1

Further reading 33

Annexes

Contributors 3

1. 5

WHO Model List (March 2010) Essenial medicines (excerpts) 3

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During the past six decades animicrobial agents1 have played a criical

role in reducing the burden of communicable diseases all over the world. However, the emergence of resistance and its rapid spread is negaing the impact of these drugs, and hindering efecive applicaion of modern technologies in miigaing human misery. While the appearance of resistance is a continuous phenomenon in microorganisms, its ampliicaion and spread is through an array of pracices conducted by human beings. Improper uilizaion of animicrobial agents, especially in high disease-burden seings, results in strong selecion pressure that allows the resistant strain to grow and rapidly replace the suscepible isolates.

Diseases due to resistant organisms take longer to heal, and require expensive and at imes toxic drugs for longer periods, oten making the disease untreatable. The resistant organisms can also move across countries through travel and trade. In that sense, animicrobial resistance is a global challenge requiring concerted eforts at naional and internaional levels to preserve the available animicrobial agents. This is possible through treatment policies such as combinaion therapy, raional prescripion, paient adherence, a strong regulatory mechanism coupled with educaional aciviies, along with an eicient surveillance system that monitors the emergence and spread of resistance as well as the uilizaion of animicrobial agents.

To facilitate this acivity at the country level, WHO has developed a strategy that is simple, pracical and easy to scale up. The regional

1 In the strict sense, all animicrobials are not anibioics since some of these are chemically synthesized. However, for ease of reading these two terms will be used synonymously in this document.

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strategy aims to accord paricular atenion to intervenions involving the introduc ion of legislaion and policies governing the use of animicrobial agents, ensuring the raional use of these drugs at all levels of health-care seings and establishing laboratory-based net works for surveillance of resistance.

Scope of the document

This document aims to provide an overview of the steps that can be initiated to establish national laboratory-based surveillance of animicrobial resistance. The document also provides guidance on key elements of a good surveillance system. The document relies heavily on the experience gained in Thailand where the naional animicrobial resistance surveillance programme has been in operaion for several years.

Guideline development process

The WHO Regional Oice for South-East Asia commissioned the WHO Collaboraing Centre on Animicrobial Resistance, Naional Insitute of Health, Ministry of Public Health, Thailand to develop the irst drat of the guidelines. The objecives were to provide a tool to developing countries in establishing procedures and practices for a national system for a laboratory-based surveillance of animicrobial resistance which should generate evidence for forming policies and programmes for the raional use of anibioics. The guidelines were reviewed by several experts at the WHO Collaboraing Centre and subsequently by colleagues in the WHO Regional Oice for South-East Asia and WHO Country Oice for India.

Guidelines development team

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Surveillance is defined as “the ongoing and systematic collection,

analysis and interpretaion of health data essenial to the planning, implementation, and evaluation of public health practice, closely integrated with the imely disseminaion of these data to those who

need to know”.

In simpler terms surveillance is data collecion for acion.

Surveillance of animicrobial resistance

Animicrobial resistance (AMR) surveillance data will help to formulate, monitor and idenify the prevailing and emerging problem, which can be contained by efecive strategy. Understandably, the majority of surveillance programmes are laboratory -based. Very few clinical data are collected and the data obtained by most surveillance programme are not useful to implement control and/or prevenion measures. One strategy to improve collecion, collaion and disseminaion for efecive use in the hospital/community is to integrate this funcion of animicrobial resistance surveillance aciviies into the exising disease surveillance aciviies.

Need for a naional animicrobial resistance

surveillance programme

The purpose of surveillance at the national level is to monitor suscepibility paterns of microorganisms to animicrobial agents which will reveal the animicrobial resistance status. This will provide reliable data that can be uilized by policy-makers or health administrators to

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review and revise the recommendaions for empirical treatment for community or hospital-acquired infecions. The regular disseminaion of animicrobial resistance informaion to physicians may improve the empirical selecion of animicrobial agents when treaing community or hospital-acquired infecions.

Informaion on animicrobial resistance derived from the surveillance can be used as an indicator of the quanitaive consumpion of anibioics in a paricular area covered by the network of hospitals. Data on the prevalence and resistance paterns of diferent pathogens derived from the surveillance will lead medical authoriies to produce prioriized steps and recommendaions or guidelines at the naional level on the control of community and hospital-acquired infecions and reduce the rate of resistance. In addiion, informaion on emerging and the increasing animicrobial resistance obtained from coninuous surveillance will alert both medical personnel and the people in the country, raise awareness and generate a common commitment to systemaically combat the animicrobial resistance crisis.

Advantages of animicrobial resistance surveillance

Animicrobial resistance surveillance is necessary to:

Understand when, where, how and why drug resistance is

emerging.

Reveal animicrobial eicacy.

Ensure the beter management of paients and infecion control

in hospital seings.

Improve management of community infecion control.

Inform policy-makers on evidence-based acion in developing

drug policy, essential medicines lists, standard treatment guidelines, procurement strategies, resource allocaion, health professional curricula and training.

Improve the empirical selecion of animicrobial agents when

treaing community or hospital acquired infecions.

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To establish naional animicrobial resistance surveillance, the following components and mechanisms are essenial:

Naional commitment

The Government or the highest public health authority should make a commitment and provide support to improve laboratory capacity for undertaking surveillance. This should be part of a naional agenda for the control and prevenion of animicrobial resistance.

Designate naional coordinator

The irst criical step to establish naional animicrobial resistance surveillance is to designate a naional coordinaing centre and give it the mandate to coordinate naionwide aciviies.

Forge a naional network

The naional coordinaing centre shall set up a naional network of selected representaive laboratories from hospitals and public health insitutes in diferent regions of the country. For beter representaion the members of the network may be from the public, private and not-for-proit organizaions as well as insitutes in diferent seings where animicrobial suscepibility paters are determined. These laboratories should ideally have quality microbiological faciliies for the determinaion of causative organisms, pathogen identification and susceptibility paterns.

Establishing a naional

surveillance system

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These regional laboratories shall provide uniform and validated data to the naional coordinaing centre to collate animicrobial resistance paterns, analyse these and disseminate imely surveillance informaion to potenial users on a regular basis.

Ensure uniformity of tesing and reporing

The members of the network need to:

Use standardized methods on collecion of clinical specimens,

laboratory test and reporing.

Assure quality of the microbiological tesing.

Be well versed with data input, analysis of data and contribuion

of informaion.

Reach an agreement on the mechanism to develop a naional/

internaional centralized database and ensure accurate and imely output as well as feedback.

Quality of surveillance data

The naional coordinaing centre should be responsible to provide support to paricipaing units in assuring quality of data through the following aciviies:

Organizaion of External Quality Assessment Scheme.

Supply of essenial materials, ie. animicrobial suscepibility

disks, transport media, reference control bacterial strains, tesing reagents.

Follow-up visits by experts/auditors.

Provision of referral services for the conirmaion of results.

Organizaion of training courses as per the requirements.

Disseminaion of technical informaion

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Types of surveillance

To set up naional resistance surveillance the country should decide the appropriate type of surveillance required to be set up depending on its needs, available infrastructure and resources and the feasibility of meeing the targets.

In a country with limited resources, surveillance may be performed by collecing primary laboratory data of common bacterial pathogens from the rouine tesing of representaive hospitals without seeking addiional reports from the primary data collectors (passive surveillance). If suicient resources are available, passive surveillance can be enhanced by the collection of additional data, which may help in initiating appropriate acions.

Laboratory-based surveillance

Prerequisites for establishing laboratory-based surveillance

Idenify organisms that should not be monitored.

Identify organisms that may be included in resistance

surveillance.

Finalize the animicrobial agents to be used for each isolate.

Develop a protocol for the determinaion of suscepibility.

Establish quality system.

Establish an informaion sharing mechanism.

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Establishment of naional laboratory-based surveillance of animicrobial resistance

A large number of microorganisms infect human beings. Not all of these need to be included in the surveillance programme. Based upon local prevalence of diseases and the importance of these in speciic health care or community seings, selecion criteria should be applied. During the iniial phase of the surveillance network, it may be beter to have fewer organisms. The spectrum can be gradually expanded to include addiional organisms.

Given below is a brief descripion of some organisms with their characterisics to facilitate decision-making:

Organisms that should not be monitored

These include the followings:

Organisms for which no standardized disk difusion method is (a)

currently available for important animicrobial agents, and hence may not be included in rouine surveillance aciviies.

Some of these are:

Streptococcus viridans

group versus penicillin. Streptococcus pneumoniae versus

cephalosporins/carba-penems.

Staphylococcus

spp versus vancomycin.

Neisseria meningiidis

versus penicillin.

Burkholderia pseudomallei versus

all animicrobial agents.

Selecion of organisms for

surveillance

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Unusual organisms which are rarely involved in serious infecions. (b)

These include: Achromobacter.

Flavobacterium.

Bacillus.

Haemophilus

non-inluenzae/non-parainluenzae.

Organisms which do not pose serious treatment problems. These (c)

include:

Bordetella.

Corynebacterium.

Listeria.

Bacteria which are doubful enteric pathogens and rarely cause (d)

outbreaks. These include

Aeromonas.

Plesiomonas.

Edwardsiella.

Enteric pathogens for which no anibioic treatment is recommended. (e)

These include:

All categories of diarhhoeagenic

Escherichia coli.

Organisms that may be included in resistance

surveillance

The following groups of organisms may be included in resistance surveillance:

Organisms which are proven pathogens and not commensal

or contaminants.

Organisms that have high potenial for spread in the community

and the hospital seing.

Organisms that are known to acquire resistance against

currently used and recommended anibioics.

Organisms that have standard interpretaion of suscepibility

test.

Organisms that are widespread in the surveillance area and are

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Guidelines for the choice of organisms

Table 1 shows suggested organisms that are to be considered for inclusion in the surveillance system

Table 1: Organisms to be included in the surveillance system Respiratory pathogens and

agents of meningiis

Streptococcus pneumoniae

from respiratory isolates (i.e.

sputum, ear, sinus) and invasive isolate (i.e. blood, CSF, pleural luid). Haemophilus inluenzae

from respiratory isolates

(i.e.sputum, ear, sinus) and invasive isolates (ie. blood, CSF, pleural luid).

Sexually transmissible diseases

Neisseria gonorrhoeae

Gram-posiive cocci Staphylococcus aureus:

community acquired.

nosocomial acquired.

Staphylococcus saprophyicus: novobiocin resistance urinary

isolates.

Coagulase-negaive staphylococci: only from sterile site.

Enterococcus faecalis. Enterococcus faecium.

Enterococcus species.

Pathogens of diarrhoeal diseases

Shigella dysenteriae.

Shigella boydii. Shigella lexneri.

Shigella sonnei. Salmonella Typhi. Salmonella Paratyphi A. Salmonella (typhoid,

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Other members of family Enterobacteriaceae (This group is responsible for community-acquired urinary tract infecions and for all type of nosocomial infecions)

Escherichia coli.

Enterobacter:

Three categories are recommended,

E. cloacae, E. aerogenes and

Enterobacter spp. for those laboratories that make no speciic ideniicaion.

Klebseilla:

Two categories are suggested

K. pneumoniae, (only subspecies

pneumoniae should be monitored), and K. oxytoca (indole posiive). Serraia spp.

Proteus:

Proteus mirabilis

• (indole negaive).

P. penneri, P vulgaris

• (indole

posiive).

Morganella morganii.

Providencia retgeri. Providencia Stuarii.

Providencia spp.

Citrobacter freundii. Other Gram-negaive bacilli Pseudomonas aeruginosa

Acinetobacter spp. Acinetobacter

• spp. OF-glucose posiive, and non-hemolysis tentaively ideniied as A.

calcoaceicus-baumannii complex,whereas Acinetobacter spp. (OF-glucose negaive) presumpively ideniied as Acinetobacter sp. other than A. baumannii.

The following list can act as a guide for prioriizing the organisms that may be included in the naional surveillance system:

Acinetobacter calcoaciicus-baumannii complex (OF - glucose posiive, non hemolysis, growth at 44°C) Acinetobacter sp. (OF - glucose negaive) Citrobacter freundii

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Enterococcus faecalis Enterococcus faecium

Enterococcus spp.

Escherichia coli community-acquired (urine

isolates)

Escherichia coli hospital-acquired (non-urine

isolates)

Haemophilus inluenzae invasive infecions (encapsulated)

Haemophilus inluenzae respiratory isolates (sputum, oiis, sinusiis)

Klebsiella oxytoca

Klebsiella pneumoniae (subspecies pneumoniae) Neisseria gonorrhoeae

Proteus mirabilis (indole negaive)

Proteus vulgaris (indole posiive)

Providencia retgeri Providencia stuarii

Providencia spp.

Pseudomonas aeruginosa

Salmonella non-Typhi-Paratyphi A Salmonella Paratyphi A

Salmonella Typhi

Serraia spp. Shigella boydii

Shigella dysenteriae

Shigella lexneri

Shigella sonnei

Staphylococcus aureus community-acquired (out -

paients)

Staphylococcus aureus hospital-acquired

Staphylococcuscoagulase negaive signiicant repeated blood

isolates Staphylococcus saprophyicus (urine)

Streptococcus pneumoniae invasive isolates (blood,

cerebrospinal luid)

Streptococcus pneumoniae respiratory isolates (sputum, ear,

sinus) Vibrio cholerae O1

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The organisms menioned in Chapter 4 and the animicrobial agents for which these need to be tested can also be categorized in a basic set, addiional set as well as supplemental set only for urinary pathogens (Table 2)

Table 2: Suggested animicrobial agents for animicrobial resistance surveillance

Micro-organisms Basic set Addiional set

Supplemental set for urine

Staphylococcus spp.

Oxacillin

(for Staph. aureus) Cefoxiin

(for Staph. aureus and coagulase negaive staphylococci) Penicillin G Erythromycin1 Clindamycin1 Gentamicin Trimethoprim-sulfamethoxazole

Levoloxacin or ciproloxacin MIC of vancomycin

Norloxacin Nitrofuran -toin

S. pneumoniae Oxacillin for penicillin Erythromycin1 Trimethoprim-sulfamethoxazole

Levoloxacin MIC of penicillin, MIC of

cefotaxime or cetriaxone or meropenem

Beta-haemolyic3, 2

Streptococcus group A, B, C, G,

Penicillin Erythromycin1 Clindamycin1

Levoloxacin Cefotaxime or cetriaxone MIC of penicillin4

Selecion of animicrobial agents

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Micro-organisms Basic set Addiional set

Supplemental set for urine

Streptococcus spp.Viridans group3, 2

MIC of Penicillin Cefotaxime Cetriaxone

Enterococcus spp.

Penicillin or Ampicillin

Gentamicin (120 µg) β-lactamase test

Vancomycin or teicoplanin

Norloxacin or ciproloxacin or levoloxa -cin Nitrofuran -toin Enterobacteri -aceae Ampicillin Amoxicillin-clavulinic acid or ampicillin-sulbactam Cefazolin Cefoxiin Gentamicin Trimethoprim-sulfamethoxazole Ciproloxacin Cefuroxime Cefotaxime or cetriaxone Cefoperazone Cefepime or cefpirome Amikacin Imipenem Ertapenem Meropenem Cefoperazone - Salbactum Norloxacin or oloxacin Nitrofuran -toin

Shigella spp.5 Ampicillin Trimethoprim-sulfamethoxazole Ciproloxacin or Norloxacin Levoloxacin Salmonella spp5.

Ampicillin Trimethoprim-sulfamethoxazole Nalidixic acid6

Ciproloxacin or norloxacin6 Cefotaxime or cetriaxone5 Levoloxacin6 MIC of ciproloxacin6

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Micro-organisms Basic set Addiional set

Supplemental set for urine

Pseudomonas aeruginosa Cetazidime Gentamicin Ciproloxacin Piperacillin-tazobactam Cefoperazone Cefepime or cefpirome Imipenem Meropenem Amikacin Cefoperazone - Salbactum Norloxacin or oloxacin Acinetobacter spp. Cefotaxime or cetriaxone Cetazidime Gentamicin Ciproloxacin Ampicillin-sulbactam Piperacillin- tazobactam Cefoperazon- sulbactam Cefepime or Cefpirome Imipenem Meropenem Amikacin Burkholderia cepacia Trimethoprim-sulfamethoxazole Cetazidime Meropenem Haemophilus inluenzae (CSF isolate) Ampicillin (β-lactamase test) Cefotaxime or cetriaxone Meropenem Haemophilus inluenzae, H. parainluenzae (respiratory isolate) Ampicillin (β-lactamase test) Amoxicillin-clavulanic acid or Ampicillin-sulbactam Trimethoprim-sulfamethoxazole Azithromycin or clarithromycin Ciproloxacin Neisseria meningiidis2 Cefotaxime Cetriaxone Meropenem MIC of penicillin

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Micro-organisms Basic set Addiional set

Supplemental set for urine

Burkholderia pseudomallei

MIC of trimethoprim-sulfamethoxazole MIC of amoxicillin-clavulinic acid MIC of cetazidime MIC of imipenem MIC of tetracycline or doxycycline

Moraxella catarrhalis

β-lactamase test

Foot notes

Not rouinely reported on organisms isolated from the urinary tract. 1.

Use Mueller Hinton agar added with 5% sheep blood for suscepibility test. 2.

The beta-haemolyic group includes the large colony-forming pyogenic strains of streptococci with 3.

Group A (Strept. pyogenes), C or G anigens and strains with group B (Strept. agalaciae) anigen. Small-colony-formimg beta-hemolyic strains with Group A, c, F, or G anigens (S. anginosus group) are considered part of the viridians group, and interpreive criteria for the viridians group should be used.

Determine MIC only on isolates from sterile sites. 4.

When fecal isolates of

5. Salmonella and Shigella spp. are tested, only ampicillin, a fuoroquinolone and trimethoprim-sulfamethoxazole should be reported rouinely. In addiion, chloramphenicol and a third-generaion cephalosporin should be tested and reported for extraintesinal isolates of Salmonella spp.

Fluoroquinolone-suscepible strains of

6. Salmonella that test resistant to nalidixic acid may be associated with clinical failure of delayed response in luoroquinolone-treated paients with extraintesinal salmonellosis. Extraintesinal isolates of Salmonella should also be tested for resistance to nalidixic acid. For isolates that test suscepible to luoroquinolones and resistant to nalidixic acid, the physician should be informed that the isolate may not be eradicated by luoroquinolone treatment, A consultaion with an infecious disease praciioner is recommended.

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Several laboratory techniques are available to determine suscepibility of microorganisms to animicrobial agents. Some of these are

Kirby-Baeur disc difusion method.

Stokes’ disc difusion method.

Minimum inhibitory concentraion (MIC) determinaion.

E-test.

Several variaions of these are now in use. The Clinical Laboratory Standards Insitute–USA (CLSI) has provided standards for disc difusion method for determinaion of animicrobial suscepibility of most of the pathogens. These standards are also updated regularly. The laboratories need to procure these standards along with interpretaion charts from CLSI for use in their faciliies.

The protocol should address the following issues for each of which the laboratory must have standard operaing procedures:

a. Preparaion of agar media

Some of the media used in laboratories are:

Mueller-Hinton agar (MHA)

MHA+ 5% sheep blood agar (MHB)

Gonococcus (GC) agar + 1% deined growth supplement

Haemophilus

test medium (HTM)

b. Preparaion of reagent

c. Preparaion or procurement of animicrobial discs

Animicrobial discs should be purchased from reliable companies which are shown by the given ceriicate of analysis inside the cartridges. These

Protocols for animicrobial

suscepibility tesing

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using, animicrobial discs should be placed at room temperature to have the same ambient temperature. This minimizes the condensaion of warm air to the cold discs. Once a cartridge is unsealed, the cartridge should then be kept at +4°C, in a box containing silica gel to ensure the anhydrous condiion. This refrigerated condiion is for a small working supply which should not be stored longer than one week. Some discs with labile drugs (e.g. imipenem, cefaclor and clavulanic acid combinaions) may retain beter stability if stored frozen unil it is used. Discard discs that reach the expiraion date stated on the label.

d. Standard turbidity using 0.5 McFarland Turbidity Standard

A 0.5 McFarland Standard is used to compare the standard turbidity. It is available commercially or can be prepared in the laboratory.

e. Measuring zone of inhibiion and interpreing results

The result is obtained by measuring the diameter of the zone of inhibiion, including the diameter of a disc in mm. A sliding caliper or ruler should be used and the zone on the back of the inverted agar plate must be measured with the following excepions:

The zone margin is the area showing no obvious growth. If

the faint growth or iny single colonies are seen, measure the colony-free inner zone.

Ignore the swarming growth of

Proteus spp. and measure the

obvious zone of inhibiion.

On MHA containing blood, measure the growth inhibiion zone

not the zone of inhibiion of haemolysis.

Interpretaion is done by comparing the measured diameter

to the breakpoint diameter shown in CLSI Tables.

Report the bacteria as suscepible, intermediate or resistant to the animicrobial agents and record the zone size of the test and control strains in the computer using WHONET programme.

Protocol for rapidly growing aerobic pathogens

Rapidly growing aerobic pathogens include Staphylococcus spp., Enterococcus spp., Salmonella spp., other Enterobacteriaceae,

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The direct colony suspension method is recommended for these organisms for the CLSI approved protocol.

Protocol for tesing fasidious organisms

Streptococcus pneumoniae

and other

Streptococcus spp.

MHA containing 5% sheep blood is recommended for suscepibility tesing of S. pneumoniae and other streptococci. The test method is

Kirby Bauer and direct colony suspension method, with the following excepions:

Prepare inoculum by suspending pure culture grown on sheep

blood agar for 18-20 hours in saline or MHB to have the turbidity of 0.5 McFarland standard.

Take the animicrobial disc (according to the list in Table 2) from

the cartridge by using sterile forceps. Place not more than ive animicrobial discs onto the surface of the agar plate (diameter of 100 mm) or no more than 12 discs on a 150 mm plate. Incubate at 35

°C in 5% CO2 atmosphere or in the candle jar for 20-24 hours.

Measure diameter of the zone of inhibition and interpret by comparing with the breakpoints shown in CLSI tables. Record the zone size of the test and control strains in the computer using WHONET programme.

Table 3. Zone diameter interpretaive standards for

Streptococcus pneumoniae (in mm)

Animicrobial agent Resistant Intermediate Suscepible

Oxacillin 1 µg* - - ≥ 20

Erythromycin 15 µg ≤ 15 16-20 ≥ 21 Co-trimoxazole 25 µg ≤ 15 16-18 ≥ 19

Levoloxacin 5 µg ≤ 13 14-16 ≥ 17

(25)

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Susceptibility test of other streptococci to oxacillin is not recommended. For beta-haemolytic streptococci only penicillin or ampicillin disc is used to do the test. In contrast, both penicillin and ampicillin discs are not reliable for viridans group streptococci. A penicillin MIC should be performed on the Viridans group streptococci isolated from sterile sites (e.g., CSF, blood, bone).

Haemophilus inluenzae and H. parainluenzae

HTM is recommended for suscepibility tesing of H. inluenzae and H. parainluenzae. Mueller-Hinton chocolate agar is not appropriate for animicrobial suscepibility tesing of Haemophilus spp. The test

method is Kirby Bauer and direct colony suspension method with the following excepions:

Inoculum is prepared by suspending pure culture grown on

chocolate agar for 20-24 hours in saline or MHB to have the turbidity of 0.5 McFarland standard.

Take the animicrobial disc (according to the list in Table 1) from

the cartridge by using sterile forceps. Place not more than ive animicrobial discs onto the surface of the agar plate (diameter of 100 mm) or no more than 12 disks on a 150 mm plate. Incubate at 35

°C in 5% CO2 atmosphere or in the candle jar for 16-18 hours.

Measure diameter of the zone of inhibiion and interpret by

comparing with the breakpoints shown in CLSI Tables.

Record the zone size of the test and control strains in computer using WHONET programme.

Table 4: Zone diameter interpretaive standards for Haemophilus inluenzae (in mm)

Animicrobial agent Resistant Intermediate Suscepible

Ampicillin 10 µg* ≤ 18 19-21 ≥ 22 Chloramphenicol 30 µg ≤ 25 26-28 ≥29 Co-trimoxazole 25 µg ≤ 10 11-15 ≥ 16

* Most of the ampicillin resistance among H. inluenzae is caused by the presence of a β-lactamase. In some seings, less than 1% of the clinical isolates of H. inluenzae are ampicillin-resistant due to another mechanism (altered penicillin binding proteins). For this reason, a negaive β-lactamase test can be reported as suscepible to ampicillin (without performing the disc test). Since many other animicrobial agents have a predictable acivity against H. inluenzae (3rd generaion cephalosporins, quinolones, amoxicillin-clavulanic

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Neisseria gonorrhoeae

GC agar containing 1% deined growth supplement is recommended for susceptibility testing of N. gonorrhoeae. Cysteine–free growth

supplement is not required for disc difusion test and chocolate agar enriched with other supplements is not appropriate for suscepibility tesing of N. gonorrhoeae.

The test method is Kirby Bauer and direct colony suspension method with the following excepions:

Inoculum is prepared by suspending pure culture grown on

chocolate agar for 20-24 hours in 5% CO2 atmosphere, in saline or MHB to have the turbidity of 0.5 McFarland standard. Take the animicrobial disc (according to the list in Table 1)

from the cartridge by using sterile forceps. Place not more than ive animicrobial discs onto the surface of the agar plate (diameter of 100 mm) or no more than 12 discs on a 150 mm plate. For animicrobial disks that produce vary large zone e.g., luoroquinolones or cephalosporins, only two to three discs may be tested per 100 mm diameter plate.

Incubate at 35

°C (do not exceed 37°C) in 5% CO2 atmosphere or in the candle jar for 20-24 hours.

Measure diameter of the zone of inhibition and interpret by comparing with the breakpoints shown in CLSI Tables. Record the zone size of the test and control strains in computer using WHONET programme.

Table 5. Zone diameter interpretaive standards for Neisseria gonorrhoeae (in mm)

Animicrobial agent Resistant Intermediate Suscepible

Penicillin 10 units* ≤ 26 27-46 ≥ 47 Tetracycline 30 µg ≤ 30 31-37 ≥38 Specinomycin 100 µg ≤ 14 15-17 ≥ 18

(27)

Establishment of naional laboratory-based surveillance of animicrobial resistance

Quality control (QC) in the laboratories should cover all diagnosic tests from the collection and evaluation of specimen through the interpretaion and accuracy of the test results. In this way, guideline for laboratory pracices should be established and revised consistently and concomitant with the establishment of internal quality control of all reagents, media, and equipment used.

The main objecives of quality control of animicrobial suscepibility by the disc difusion method are to control the following:

The precision and accuracy of the test method. (1)

The quality of reagents, medium, and antimicrobial discs (2)

used.

Laboratory performance, reading, and interpretaion of test (3)

results.

With the use of reference bacterial strains recommended by CLSI, this process will ensure the highest achievement in the control of precision and accuracy of the test method. The standard bacterial strains should be obtained from reliable sources (e.g., American Type Culture Collecion or Culture Collecion Center, Naional Insitute of Health, Department of Medical Sciences, Nonthaburi, Thailand).

Storing and testing quality control strains should follow the procedure described by CLSI.

Quality control of animicrobial

suscepibility tesing

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Internal quality control for the rapid-growing aerobic

pathogens

Quality control of the test method is performed by using the following standard bacterial strains.

: Staphylococcus aureus ATCC 25923 (DMST 8840)

: Escherichia coli ATCC 25922 (DMST 4212)

: Pseudomonas aeruginosa ATCC 27853 (DMST 4739)

: Enterococcus faecalis ATCC 29212 (DMST 4737)

The Enterococcus standard strain is used to test the minimum level

of thymidine and thymine in Mueller-Hinton medium for suscepibility tesing of bacteria to co-trimoxazole. The high level of thymidine or thymine gives rise to the false negaive result. Thus, all batches of this medium should be tested by performing the suscepibility of E. faecalis ATCC 29212 or 33186 to co-trimoxazole. Suicient low level of thymidine and thymine is indicated by an inhibiion zone of ≥ 20 mm. This QC should be done once a week or whenever the new batch of medium is prepared or whenever the new disc cartridge is opened.

The acceptable minimum and maximum inhibiion zones for a single QC test are shown in corresponding CLSI Tables. If the QC result is out of range only one out of 20 tests, it is acceptable. If the QC result is out-of-control more than one test, correcive acion is required immediately.

Internal quality control for fasidious organisms

Streptococcus pneumoniae

Standard bacterial strain used for QC is S. pneumoniae ATCC 49619.

Perform the same test procedure as described for clinical isolates of

S. pneumoniae (Mueller–Hinton sheep blood agar, incubated at 35°C in 5%

CO2 atmosphere or in the candle jar for 20-24 hours).The minimum and maximum inhibiion zones for a single QC test are shown in CLSI Table.

Neisseria gonorrhoeae

Standard bacterial strain used for QC is N. gonorrhoeae ATCC 49226.

Perform the same test procedure as described for clinical isolates of

N. gonorrhoeae (GC agar base plus 1% deined growth supplement,

(29)

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the candle jar for 20-24 hours).The minimum and maximum inhibiion zones for a single QC test are shown in CLSI Table.

Haemophilus inluenzae

Standard bacterial strain used for QC is H. inluenzae ATCC 49766. Perform the same test procedure as described for clinical isolates of H. inluenzae (HTM consising of 15 µg/ml β–NAD;15 µg/ml bovine hemain; and 5 g/L yeast extract; adjust pH to 7.2 to7.4 incubated at 35°C in 5% CO2 atmosphere or in the candle jar for 16-18 hrs).The minimum and maximum inhibiion zones for a single QC test are shown in CLSI Table.

Table 6 shows the list of standard bacterial strains collected at the Culture Collecion Center, NIH, Department of Medical Sciences, Nonthaburi, Thailand (DMST-CC). The detail of strains used for QC is also described.

Table 6. List of standard bacterial strains for QC of animicrobial suscepibility tesing

Species Strain No. Primary use/characterisics

1 Enterococcus

faecalis

DMST 4736 =ATCC 29212

Sensiive to vancomycin, high level gentamicin (16-23 mm), and high-level streptomycin (14-20 mm)

Use to check media that is acceptable for tesing sulfonamides, trimethoprim, and their combinaion, use to test vancomycin screen plate (will not grow) and high-level aminoglycoside disk and MIC tests for enterococci.

2 Enterococcus

faecalis

DMST 4737 =ATCC 51299

Resistant to high level gentamicin, high -level streptomycin, and vancomycin. Use to test vancomycin screen plate (will grow) and high-level aminoglycoside disc and MIC tests for enterococci.

3 Enterococcus

faecium

DMST 4743 =UCLA 192

(30)

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4 Escherichia coli DMST 4212

=ATCC 25922

Sensiive to all gram negaive organisms

5 Escherichia coli DMST 7948

=ATCC 35218

Ampicillin-resistant but sensiive to β-lactamase/β-lactamase inhibitor combinaions. Use to test Amp/Clav (17-22 mm), Ticar/Clav, and other combinaion drugs.

6 Haemophilus

inluenzae

DMST 7943 =ATCC 49247

Recommended reference strain for animicrobial suscepibility tests 7 Haemophilus inluenzae DMST 7944 =ATCC 49766 Ampicillin suscepible,

recommended reference strain for animicrobial suscepibility tests

8 Pseudomonas

aeruginosa

DMST 4739 =ATCC 27853

Use to monitor caion content and pH of media. Aminoglycosides are especially sensiive to caions.

9 Staphylococcus aureus

DMST 8840 =ATCC 25923

Oxacillin sensiive (18-24 mm) and penicillin sensiive -β-lactamase negaive.

Use to test gram-posiive drugs with disc difusion test and as negaive control for the oxacillin agar screen plate (will not grow).

10 Streptococcus pneumoniae

DMST7945 =ATCC 49619

Use to test disc difusion and E-test, MIC test for

Streptococcus spp. including S. pneumoniae.

DMST = Department of Medical Sciences , Thailand ATCC = American Type Culture Collecion UCLA = University of California, Los Angeles

External quality assessment scheme

(31)

Establishment of naional laboratory-based surveillance of animicrobial resistance

Various factors that inluence the results of the disc difusion tests are summarized below:

Element Check possible reason

Standard bacterial strain

Use of wrong strain

-

Improper maintenance, e.g. storage and

-

frequent subculture

Contaminaion or changes in the geneic

-

characterisics Tesing supplies - Improper storage

Contaminaion or use of the expired materials

-

Use of damaged or defecive agar plates

-

Tesing procedure

Use of wrong incubaion temperature or length

-

of ime

Use of incorrectly prepared inocula (too light or

-

too heavy)

Use of deteriorated or expired turbidity

-

standard

Inoculums prepared from the uncontrolled pH

-

Mueller–Hinton medium or from selecive or diferenial agar medium

Use of the wrong disk or placement of disk

-

provides inadequate contact with agar Reading errors - Inhibiion zone is too small or a faint growth

appeared (paricular with sulfonamide, trimethoprim and their combinaion). This may due to the inhibitory substances in the medium. Equipment - No calibraion or calibraion funcioning

improperly

Troubleshooing for disc

difusion tests

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Quality control by result veriicaion

A clinical bacteriologist should review all test results criically in addiion to the regular quality control of test procedures. This is done to verify whether the results are suspect or illogical, which usually results from:

Reading errors or use of the wrong discs

Incorrectly ideniied clinical organisms

Improper test performance

Some bacteria provide the typical or consistent suscepibility

proile, e.g.

Proteus

species. are known to be nitrofurantoin and tetracycline-resistant bacteria.

Streptococcus pyogenes

usually shows no resistance to penicillin.

Serraia

, Citrobacter, Enterobacter, and Klebsiella pneumoniae are usually resistant to ampicillin.

Most

staphylococci and streptococci are susceptible to vancomycin. (If resistant strains are found, recheck the ideniicaion of the organisms. Lactobacillus, Leuconostoc, and Pediococcus which have similar cell morphology to staphylococci

and streptococci are resistant to vancomycin)

Shigella

spp. is usually norloxacin suscepible.

The clinical isolates that give the suspected or illogical results and are important for epidemiology e.g., norloxacin-resistant Shigella,

vancomycin-resistant Staphylococcus, should be sent for conirmaion at

the reference laboratory. A clinical bacteriologist should be informed of the informaion on typical, atypical, impossible or unusual test results regularly and revise as necessary.

Examples of the suspect test results

Clinical isolates show resistance to all antimicrobial discs

(possible contaminaion with yeast).

Clinical isolates express resistance to amikacin but are suscepible

(33)

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to gentamicin and tobramycin or gram-negaive bacilli show resistance to the third generation cephalosporin but are suscepible to the irst or second generaion cephalosporin.

Staphylococcus aureus

that is oxacillin-resistant but suscepible to penicillin.

The important thing in animicrobial suscepibility tesing using disc difusion test is the precision of test result reporing. Clinical isolates that are suscepible but are reported as drug resistant will result in the administraion of higher drug classes to the paients. A very major error is reporing suscepibility instead of resistance which leads to administraion of anibioics to paients which will have no efect on disease causing organisms.

Unusual test results

Table7:Example of phenotypes that have not been reported

Gram-negaive Organisms

Animicrobial agent

Gram-posiive organisms

Animicrobial agent

Citrobacter freundii Enterobacter spp.

Serraia

marcescens

Ampicillin, cefazolin, or cephalothin-S

E. faecalis Ampicillin or penicillin-R Daptomycin-NS Linezolid-R Quinuprisin-dalfoprisin-S Klebsiella

spp. Proteus vulgaris Providencia

spp.

Ampicillin-S E. faecium Daptomycin-NS Linezolid-R

Stenotroph-omonas malto-philia

Carbapenem-S S. aureus Daptomycin-NS

Linezolid-NS Quinuprisin-dalfoprisin-I or R

(34)

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3rd generaion

cephalosporin-NS Fluoroquinolo -ne-NS Staphylococcus, coagulase-negaive Streptococcus, viridans group Daptomycin-NS Linezolid-NS Vancomycin-I or R Neisseria gonorrhoeae

3rd generaion

cephalosporin-NS

S. pneumoniae Fluoroquinolo

-ne-R Linezolid-NS Vancomycin-NS Neisseria menigiidis Aztreonam-NS 3rd generaion

cephalosporin-NS

Meropenem-NS Minocycline-NS Chlorampheni

-col-I or R Fluoroquinolo

-ne-I or R Rifampin-I or R

Streptococcus,

beta group

Ampicillin or penicillinc -NS

3rd generaion

cephalosporin -NS

Daptomycin-NS Linezolid-NS Vancomycin-NS

Any organism Resistant to all agents rouinely tested

Any organism Resistant to all agents rouinely tested

Note: R: Resistant; I: Intermediate suscepible; S: Suscepible; NS: nonsuscepible are used for animicrobial agents for which only suscepible interpreive criteria are provided.

When these phenotypes are observed, they should be veriied as follows:

(35)
[image:35.499.128.427.114.462.2]

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Table 8: Example of uncommon phenotypes possibly resuling from technical errors

Gram-negaive organisms Gram-posiive organisms

Escherichia coli ESBL - conirmed

posiive

Enterococcus

spp.

Vancomycin-R

Klebsiella spp. ESBL - conirmed posiive

E. faecalis High-level amin

-oglycosides-R (paricularly if an isolate from sterile body site)

Salmonella spp. 3rd generaion

cephalosporin-I or R

Fluoroquinolone-I or R or nalidixic-R

E. faecium High-level amin

-oglycosides-R (paricularly if isolate from a sterile body site), Quinuprisin-dalfoprisin-R Pseudomonas aeruginosa Concurrent gentamicin and tobramycin and amikacin -R

S. aureus Oxacillin-R

Stenotroph-omonas maltophilia Trimethoprim-sulfamethox -azole-R

S. pneumoniae Penicillin-R

3rd generaion

cephalosporin- R Neisseria gonorrhoeae Fluoroquinolone-R Streptococcus, viridans group

Penicillin-I or R

Note: R: Resistant; I: Intermediate suscepible

When these phenotypes are observed on individual paient isolates, the veriicaion steps as outlined ater Table 7 should be considered in a given situaion. Reports of Salmonella spp. that are intermediate

or resistant to 3rd generaion cephalosporins and/or intermediate or

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WHONET software which can be freely downloaded from (http:// www.who.int/drugresistance/whonetsotware/en/) is recommended to input the data of suscepibility test results. WHONET is a Windows-based database sotware developed for the management and analysis of microbiology laboratory data with a special focus on the analysis of animicrobial suscepibility test results.

Essenial data set

The recommended minimal data to be inputed by hospital laboratory is as follows:

Paient idenity (hospital number)

Sex

Age

Specimen idenity (laboratory number)

Locaion (ward where paient admited)

Locaion type (whether the paient is inpaient, outpaient,

intensive care, or from community ) Specimen type (site of infecion)

Name of isolate (genus species, genus only or group of

species)

Quanitaive suscepibility data (diameter of inhibiion zone or

minimum inhibiion concentraion)

Data collecion analyses

and disseminaion

(37)

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(38)

AMR Surveillance: Questionnaire for Assessment of National (1)

Networks 2003. WHO/CDS/CSR/RMD/2003.1 Centers for Disease Control and Prevention.

(2) Manual for the

Laboratory ideniicaion and animicrobial suscepibility tesing of bacterial pathogens of public health concern in the developing

world. World Health Organizaion.WHO/CDS/CSR/ EPH.2002.15

Clinical and Laboratory Standards Insitute.

(3) Performance Standards

for Animicrobial Disk Suscepibility Tests, 10th ed., Approved Standard M02-A10. Volume 29 Number 1, Clinical and Laboratory Standards Insitute, Villanova, PA. 2009.

Clinical and Laboratory Standards Insitute.

(4) Performance Standards

for Animicrobial Disk Suscepibility Tesing; Twenieth Informal Supplement M100-S21. Volume 31 Number 1, Clinical and Laboratory Standards Insitute, Villanova, PA. 2011.

Guidelines for the Collecion of Clinical Specimens during Field

(5)

Invesigaion of Outbreaks. World Health Organizaion, 2000. WHO/CDS/CSR/EDC/ 2000.4

Nugent R., Back E., Beith A.

(6) The Race against Drug Resistance: A Report of the Center for Global Development’s Drug Resistance

Working Group. The Center for Global Development, 2010.

Protocol for the Assessment of Naional Communicable Disease

(7)

Surveillance and Response Systems: guidelines for assessment

teams. World Health Organization, 2001. WHO/CDS/CSR/

ISR/2001.2

Surveillance Standards for Animicrobial Resistance

(8) WHO/CDS/

CSR/DRS/2001.5 Vandepite J et al.

(39)

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World Health Organizaion, 1991. ISBN 92 4 154425 2

Vandepite, J., El-Nageh, M., Tikhomirov, E., Stelling, J.M., Estrela, (10)

A. Guidelines for Animicrobial Resistance Surveillance. Geneva, World Health Organizaion, 1996.

WHO Recommended Surveillance Standards.

(11) World Health

Organizaion,1999. WHO/CDS/CSR/ISR/99.2

World Health Organizaion and Centers for Disease Control and (12)

Prevenion. Laboratory Methods for the Diagnosis of Epidemic Dysentery and Cholera. Centers for Disease Control and Prevenion, 1999. WHO/CDS/CSR/EDC/99.8

WHO Regional Strategy for Prevention and Containment of (13)

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Annex 1

Contributors

Ms Surang Dejsalert Director

WHO COllaboraing Centre on Animicrobial Resistance and Training Chief of Miscellaneous Bacteriology Secion Naional Insitute of Health Department of Medical Sciences Ministry of Public Health, Nonthaburi, Thailand

Ms Wantana Paveentkiiporn Chief of Legionella

Laboratory Miscellaneous Bacteriaology Secion Naional Insituteof Health Department of Medical Sciences Ministry of Public Helath

Nonthaburi, Thailand

and several scienists working in WHO CC on AMR and Training

Dr Sangeeta Joshi Head of Microbiology Manipal Hospital Bangalore

Dr Vikas Manchanda Head of Microbiology Chacha Nehru Bal Chikitsalya Shahdara

Delhi

Dr Anuj Sharma NPO (Laboratories) WHO Country Oice India New Delhi

Dr Rajesh Bhaia

(41)

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Annex 2

WHO Model List (March 2010)

Essenial Medicines

(excerpts)

16th ediion (updated)

The core list presents a list of minimum medicine needed for a basic

health-care system, lising the most eicacious, safe and cost-efecive medicines for priority condiions. Priority condiions are selected on the basis of current and esimated future public health relevance, and potenial for safe and cost-efecive treatment. Some examples of anibioics in core list are amoxicillin, gentamicin, cefalexin etc.

The complementary list presents essenial medicines for priority

(42)

Gambar

Table 2: Suggested animicrobial agents for
Table 4: Zone diameter interpretaive standards for
Table 5. Zone diameter interpretaive standards for Neisseria
Table 6. List of standard bacterial strains for QC of animicrobial suscepibility tesing
+2

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