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Influence of genotype on the response to a caloric restriction program (nutrigenetics) and the effect of caloric restriction on gene expression (nutrigenomics)

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Is Sugar a New Fat: Genetics, Environment

and Gut Microbiota Perspective

Safarina G. Malik

ina@eijkman.go.id

Lembaga Biologi Molekuler Eijkman

Jl Diponegoro 69, Jakarta 10430

Indonesia

(2)

Dynamic relationship:

gene-environment-development

See: Simopoulos, Annu Rev Public Health, 2010

2

Nutritio

n

Lifestyle

Culture

Econom

y

Social

(3)

Infuence of genotype on the response to a

caloric restriction program (nutrigenetics)

and the efect of caloric restriction on gene

expression (nutrigenomics)

(4)

Lifestyle and obesity

Industrialization has changed lifestyle, diet, and

health of individuals living in urban areas

Correlated with the rise of obesity and the number

of associated deaths

Lifestyle

modifications aim to reduce the burden

of

obesity

and reduce the associated conditions

(5)

Genetic association with adiposity

appeared to be more pronounced with

greater intake of sugar-sweetened

beverages

(6)

Sugary drinks in the pathogenesis of obesity

and cardiovascular diseases

08/11/2017 Glucose; 6

Fructose

(7)

Changes in water and beverage intake and

long-term weight changes

08/11/2017 Pan et al, Int J Obes 7

(8)

Non-caloric artificial (NAS)

sweeteners and the microbiome:

findings and challenges

08/11/2017 8

NAS-Bacteria

interactions

(9)

Diverse infuences on the epidemic

lifestyle disease – what to do and how?

Host Factors

(Genetic

background,

immunological

state)

Socio-economic, environment

(in-utero exposure, diet,

pharmaceuticals, exercise)

Gut Microbiota

(composition,

activity)

Human

Health

The problem:

An

epidemic of obesity

driven by lifestyle

change.

Greater understanding of the tripartite infuence of on

the host state is needed

IMELDA

:

Indonesian Model for Epidemic Lifestyle Disease

Associations

(10)

Bali in transition: 30 years ago

economy was largely

agricultural-based

Islet in the terraced rice fields of Bali, Indonesia. Photo copyright: Yann Arthus-Bertrand.

From the postcard book THE EARTH FROM THE AIR

(11)

Bali in transition: today tourism is

the largest single industry in Bali

Rice fields were converted to villas and cottages, souvenir

(12)

Why study the Balinese?

1. Impact of lifestyle changes

for the Balinese (urban vs

rural environment)

2. Susceptibility gene(s)

associated with disease traits

3. Genes-environment

interaction in infuencing

disease manifestation

(13)

The Bali Study: Genes-environment

interactions – demonstrated diferences

metabolism in urban vs rural

Variable

Urban

Rural

P-value

N

580

492

Age (years)

43.4

12.7

45.6

16.6

0.110

BMI

(kg/m2)

24.1

4.6 21.7

4.0

<0.001

WC (cm)

89.2

9.8

76.9

10.4

<0.001

SBP

(mmHg)

117.3

16.8

119.4

18.6

0.061

DBP

(mmHg)

76.4

10.8

76.3

11.2

0.845 

FPG (mg/dl)

93.6

30.1

99.2

37.4

<0.001

TG (mg/dl)

139.1

84.7

115.4

57.9

<0.001

HDL

(mg/dl)

52.0

12.5

55.6

12.2

<0.001

LDL (mg/dl)

119.5

31.6

124.8

31.9

0.005

TC (mg/dl)

194.2

36.0

199.7

37.7

 0.018

Suastika et al, 2011; Saraswati et al, 2011; Malik et al, 2011; Oktavianthi

(14)

Bali

North Kalimantan

Mt. Kidul

West Sumba

Biometric s (incl.

BMI)

Fecal Microbiot

a

Diet Data

40 samples:

All females, Age 18 – 27

Febinia CA et al, manuscript in prep

16/11/2017 14

The IMELDA Project:

(15)

MtDNA genetic background is

associated with waist-hip biometrics

MtDNA macro-haplogroup M: higher WC and

WHR

Febinia CA et al, manuscript in prep
(16)

16/11/2017 16

Famil y

Balinese gut microbiota: 2 types of

communities

(17)

Associations of Balinese gut

microbiota with mtDNA and obesity

Balinese gut microbiota is associated with mtDNA haplotype

Prevotella-type in Balinese gut microbiota is associated with obesity

16/11/2017 17

T2 Cluster

T1 Cluster

Prevotella

Bacteroides

(18)

Rank-based Linear Models

Balinese (n = 40) Estimate Std. Error t.value p.value

Carbohydrate (% kcal)

(Intercept) 43.74319 4.62134 9.4655 < 0.001

Prevotella 0.15099 0.17701 0.853 0.39916

Bacteroides 0.31629 0.15856 1.9947 0.05348

Fat (% kcal)        

(Intercept) 36.604416 4.871993 7.5132 < 0.001

Prevotella -0.034228 0.170677 -0.2005 0.84215

Bacteroides -0.300355 0.152888 -1.9645 0.05701

Protein (% kcal)      

(Intercept) 19.400851 1.540659 12.5926 < 0.001

Prevotella -0.150416 0.062606 -2.4026 0.02141

Bacteroides -0.044671 0.056081 -0.7965 0.4308

Diet diferences

by Obesity

Diet Association

with Microbiota

lean obese obese vs.

lean

Diet Components (n = 38) (n = 8) p-value

% kcal

Carbohydrate 51 ± 11 53 ± 13 0.692

% kcal Fat 30 ± 11 32 ± 13 0.723

% kcal Protein 19 ± 5 15 ± 3 0.035

Protein Intake Ratio in Balinese is Associated with

Obesity

and

Prevotella

abundance

(19)

SUMMARY

Obesity is tightly linked to interaction of genetics with

environment

An epidemic of obesity is driven by lifestyle changes –

increase intake of sugar

Gut microbiota might be infuenced by genetic

background

There is an indication of gut microbiota infuence on

obesity

Gut microbiota is modulated by diet, including sugar,

that in turn will infuence general health

Greater understanding of the tripartite (host factors,

socio-economic-environment, gut microbiota)

infuence on the host state is needed

(20)

Acknowledgement

08/11/2017

Eijkman Institute for Molecular Biology

 Hidayat Trimarsanto

 Clarissa A. Febinia

 Sukma Oktavianthi

 Herawati Sudoyo

 Lidwina Priliani, MSc

 Ria Hasnita

 Artricia Rasyid

 Rut C. Inggriani

 Asri Sulfianti

 Rahma Fitri Hayati

Faculty of Medicine, Udayana University

 Ketut Suastika

 Made Ratna Saraswati

 I Wayan Weta

 Desak Made Wihandani

 Pande Dwipayana

 Students of Faculty of Medicine

Faculty of Public Health, Universitas Indonesia

 Ratna Djuwita Hatma

 Rizka Maulida Charles Perkins Centre, the University

of Sydney

(21)

Gene hunter @ Eijkman Institute

Thank you

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