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3D-MOLECULAR SCREENING OF DIKETOPIPERAZINE DERIVATES ON Staphylococcus aureus DEHYDROSQUALENE SYNTHASE USING VINA

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Academic year: 2017

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Figure 1 the molecules have similar structures.
Figure 2-  Docking binding energy (kcal/mol) of top thirteen 3D-molecular screening using Vina on Staphylococcus aureus dehydrosqualene synthase protein (2ZCO), diketopiperazine derivates = DKPin4, DKPin2, 07038 and van-piper (VAN-DKP); curcumin analogues = HG02, PG02, 0702bR, and 0702aR; others are reference compounds from 3D-MIMICs Database
Figure 5- Binding site pocket of diketopiperazine derivates on 2ZCO (reproduced by PyMol)

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