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EFFECT OF THE ION TREATMENT ON AN RNA HAIRPIN: MOLECULAR DYNAMICS STUDY | Widjajakusuma | Indonesian Journal of Chemistry 21365 40451 1 PB

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Fig 1. The 14-mer uCACGg hairpin which consists of astem and a loop region with numbering
Table 3. Structural characteristic for the uCACGg hairpinof MD simulations using AMBER98 force field withdifferent ion concentration of Na+ and one concentrationof Mg2+
Fig 3. RMSF of backbone atoms and O2P/C14 relativeto their average positions after fitting to all atoms foruCACGg hairpin at different concentration of Na+ andMg2+
Fig 4. with different concentration, zooms of ion occupancies are provided in the right side., 0.5 M Naelectronegative atoms of uCACGg hairpin
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