Supplementary Table 1: Top Hit SNPs
Chromosome
CD associated SNPs from Franke et al
Proxy SNP in our data
set. * SNP from Franke et al
used
Minor Allele
Major Allele
Minor Allele
Frequency Distance RSquared DPrime
5 rs2549794 rs10044354 A G 0.41 75946 0.933 1
9 rs3810936 rs10114470 A G 0.29 5113 1 1
2 rs10181042 * A G 0.45
2 rs6738825 rs10196612 G A 0.47 2756 1 1
11 rs102275 * G A 0.35
2 rs10495903 * A G 0.14
9 rs10758669 * C A 0.40
14 rs8005161 rs11159833 A G 0.10 3409 1 1
5 rs11167764 * A C 0.18
12 rs11564258 rs11174631 A G 0.07 407182 0.402 0.826 10 rs4409764 rs11190140 G A 0.46 7356 0.966 0.983 10 rs1819658 rs1199085 G A 0.19 14126 0.792 0.947
1 rs11209026 rs12030948 A C 0.44 4193 0.084 1
1 rs7517810 rs12037853 G A 0.28 1057 1 1
1 rs1998598 rs12092948 G A 0.32 37675 0.88 0.938
10 rs1250550 * A C 0.26
5 rs12521868 * A C 0.47
2 rs780093 rs1260326 A G 0.45 11663 0.916 1
19 rs12720356 * C A 0.10
10 rs12722489 rs12722515 A C 0.11 20782 0.853 1
3 rs13073817 * A G 0.33
5 rs11742570 rs1373692 A C 0.36 20599 0.964 0.982
7 rs1456896 * G A 0.28
8 rs4871611 rs1551398 G A 0.37 2481 1 1
15 rs17293632 rs16950687 G A 0.29 21417 0.748 0.949
21 rs1736020 rs1736148 G A 0.38 660 0.915 0.982
6 rs1847472 * A C 0.32
18 rs1893217 * G A 0.16
19 rs740495 rs2024092 A G 0.24 804 0.625 0.896
16 rs2076756 * G A 0.0.34
6 rs212388 * G A 0.42
10 rs10761659 rs224121 A C 0.21 1788 0.301 1
2 rs2058660 rs2272128 G A 0.26 14520 0.974 1
22 rs2412973 * C A 0.48
22 rs713875 rs2412973 A G 0.15 62856 0.93 0.964
1 rs2476601 * A G 0.07
6 rs1799964 rs2844480 A G 0.23 22513 0.852 0.947
17 rs2872507 * A G 0.48
1 rs3024505 * A G 0.19
1 rs3180018 * A G 0.26
3 rs3197999 * A G 0.37
5 rs359457 * G A 0.37
13 rs3764147 * G A 0.32
2 rs3792109 * G A 0.40
10 rs12242110 rs3936503 A G 0.34 13562 0.942 0.98
6 rs415890 rs400837 A G 0.43 4375 1 1
9 rs4077515 * A G 0.45
1 rs4656940 * G A 0.20
16 rs151181 rs4788084 A G 0.39 49331 0.93 1
20 rs4809330 * A G 0.25
14 rs4902642 * A G 0.36
6 rs17309827 rs4959832 C A 0.38 1794 0.912 1
22 rs181359 rs5754217 A C 0.24 11034 1 1
5 rs6556412 * A G 0.40
8 rs6651252 * G A 0.10
19 rs281379 rs676388 A G 0.46 2305 1 1
6 rs6908425 * A G 0.19
6 rs6568421 rs6938089 A G 0.36 35045 0.588 0.797
11 rs694739 * G A 0.35
1 rs2797685 rs697686 A G 0.35 28845 0.308 0.961
11 rs7927997 rs7130588 G A 0.41 30692 0.948 1
17 rs11871801 rs7223784 C A 0.19 6808 1 1
21 rs2838519 rs7282490 G A 0.44 718 0.966 1
19 rs736289 * G A 0.33
1 rs7554511 rs7522462 A G 0.23 4033 1 1
2 rs13428812 rs7583409 G A 0.34 1411 1 1
5 rs7702331 * G A 0.33
5 rs7714584 * G A 0.16
13 rs2062305 rs9594746 G A 0.46 63220 0.916 0.966
17 rs3091315 rs991804 A G 0.24 5940 0.98 1
2 rs7423615 rs9989899 A G 0.21 2743 1 1
