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Biotropika: Journal of Tropical Biology. 2019. 7(3)

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E-ISSN: 2549-8703

Biotropika: Journal of Tropical Biology

Biotropika: Journal of Tropical Biology is a scientific journal published by Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya established since 2013. Biotropika: Journal of Tropical Biology is a peer-reviewed journal that strives to provide scientific information on the research results which focused on biological science in tropical regions including biotechnology, biodiversity, microbiology and environmental sciences. Biotropika: Journal of Tropical Biology publishes three issues each year.

(Biotropika: Journal of Tropical Biology adalah jurnal ilmiah yang diterbitkan oleh Jurusan Biologi, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Brawijaya sejak 2013. Biotropika: Journal of Tropical Biology adalah jurnal yang ditelaah oleh mitra bestari yang menyediakan informasi ilmiah tentang hasil-hasil penelitian yang fokus pada kajian biologi di wilayah tropis meliputi bioteknologi, biodiversitas, mikrobiologi dan ilmu lingkungan. Biotropika: Journal of Tropical Biology menerbitkan tiga isu/ nomor setiap tahun).

EDITORIAL TEAM Editor in Chief

Yoga Dwi Jatmiko, M.App.Sc., Ph.D (Scopus ID: 57192984241)

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Managing Editor

Eko Suyanto, M.Sc

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Muhammad Yusuf, M.Si

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Editorial Board

Prof. Sutiman Bambang Sumitro, DSc (Scopus ID: 55218596400)

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Prof. Widodo, PhD. Med.Sc

(Scopus ID: 57190247745)

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Prof. Muhaimin Rifa’i, PhD. Med.Sc

(Scopus ID: 8269391600)

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Luchman Hakim, M.Agr.Sc., Ph.D

(Scopus ID: 55293349000)

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Rodiyati Azrianingsih, M.Sc., PhD

(Scopus ID: 56560101900)

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Amin Setyo Leksono, M.Si., Ph.D

(Scopus ID: 12445990300)

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Zulfaidah Penata Gama, M.Si., Ph.D

(Scopus ID: 55573337700)

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Sugiono Saputra, Ph.D

(Scopus ID: 57076979100) Mikrobiologi Division, Research Center for Biology, Indonesian Institute of Sciences, Indonesia

Dr. Sundari, M.Pd

(Scopus ID: 57204425264)

Biology Education, Faculty of Education, University of Khairun, Ternate, Indonesia

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Editorial Team would like to thank to peer reviewer who has been invited by Biotropika: Journal of Tropical Biology Volume 7 Number 2, 2019

Romualdus Nugraha Catur Utomo, M.Eng.

Institute of Applied Microbiology (IAMB), RWTH Aachen, Germany Dr. rer. nat Andhika Puspito Nugroho (Scopus ID : 42662077800) Faculty of Biology, Universitas Gadjah Mada

Nur Isnaningsih, M.Si

Zoology Division, Research Center for Biology, Indonesian Institute of Sciences, Indonesia Prof. Luchman Hakim, M.Agr.Sc., PhD (Scopus ID: 55293349000)

Biology Department, Faculty of Mathematics and Natural Sciences, University of Brawijaya, Yoga Dwi Jatmiko, M.App.Sc., Ph.D (Scopus ID: 57192984241)

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Dr. Jati Batoro

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Dr. Bagyo Yanuwiadi

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Ernanin Dyah Wijayanti, S.Si., MP

Academy of Pharmacy and Food Analysis of Putra Indonesia Malang, Indonesia Bayu Agung Prahardika, M.Si.

Biology Department, UIN Maulana Malik Ibrahim, Malang Dr. Agung Pramana Warih Marhendra, M.Si

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Rodiyati Azrianingsih, S.Si., M.Sc., Ph.D

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya Novita Kartika Indah, S.Pd., M.Si.

Biology Department, Faculty of Mathematics and Natural Sciences, Universitas Negeri Surabaya

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All of our gratitude goes to Almighty God because of His blessed, Biotropika: Journal of Tropical Biology publishes scientific writing which are the results of research from academics in Indonesia. In this edition, Biotropika: Journal of Tropical Biology presents various research. One of the articles presented in English give an overview about the ethnobotanical study of plant in historical-religious tourism area and the sacred place at Sumenep, Madura.

The contents of this edition begins with the molluscs diversity in Pasir Putih beach, South Lampung was dominated by Cerithiidae family. The Shannon-Wiener Molluscs index on the Pasir Putih beach was included in the low category. Identification of mudskipper species in Surabaya dan Sidoarjo beach was found four species from three different locations and identified as Boleophthalmus boddarti, Periopthalmus novemradiatus, Periopthalmus mallacensis, and Periophthalmodon septemradiatus. Exploration of plant in ethnobotany perspective is interesting to study of plants diversity and socio-cultural value associated with local wisdom. Totally 31 plant species were found in study sites, covering cultivated and socio-cultural plants that was related to role of the location where they took place.

Ethnobotany study of plant also was reported in the Hindu community of Jagaraga village, West Lombok regency, West Nusa Tenggara. Exploration of antibiotic-producing microbes was found four isolates of actinomycetes ACB34a, ACB44c, ACB54c and ACB55c. The research results shown that the four isolates have similarities to the character of different genus, which were Actinomadura, Nocardia, Streptomyces and Actinomadura, respectively based on phenotypic characteristics and the similarity index using Clad97. In other study, human activities on coastal waters at Spermonde archipelago, Makassar, South Sulawesi had an impact on organic matter pollution and increased the diversity of macroalga and subsequently reduced the diversity of Echinoderms. Moreover, the study of antibacterial activity of galangal oil nano-emulsion can be used as a candidate for the treatment of gastric infections caused by Helicobacer pylori.

The publication of this edition is also a hard work and the attention of many parties, therefore the Editorial team thank the reviewers who willing to provide inputs and criticisms for improving the writing quality. The members of the editors who have spent their time to let this issue can be published properly. May the articles in this journal can be beneficial to the readers and be a reference for future studies.

Regards, Editorial Team

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Segala puji syukur kita sampaikan kepada Tuhan YME karena atas karunia-Nya, Biotropika:

Journal of Tropical Biology kembali menerbitkan tulisan-tulisan ilmiah yang merupakan hasil penelitian dari para akademisi di Indonesia. Pada edisi ini, Biotropika: Journal of Tropical Biology menyajikan berbagai hasil penelitian. Salah satu artikel ilmiah disajikan dalam bahasa Inggris yang melaporkan mengenai studi etnonotani tanaman di kawasan wisata sejarah-religi dan tempat keramat di Sumenep, Madura.

Isi tulisan pada edisi ini dimulai dengan laporan penelitian mengenai diversitas moluska di pantai Pasir Putih, Lampung Selatan yang didominasi oleh famil Cerithiidae. Indeks Shannon-Wiener untuk Moluska yang hidup di pantai Pasir Putih termasuk kategori yang rendah. Identifikasi jenis ikan mudskipper di pantai Surabaya dan Sidoarjo ditemukan terdapat 4 jenis dari 3 lokasi yang berbeda dan diidentifikasi sebagai Boleophthalmus boddarti, Periopthalmus novemradiatus, Periopthalmus mallacensis, and Periophthalmodon septemradiatus. Eksplorasi tanaman dari sudut pandang etnobotani sangat menarik untuk mengkaji diversitas tanaman dan nilai-nilai sosio-kultural yang berkaitan dengan kearifan lokal. Total ditemukan sebanyak 31 spesies tanaman meliputi tanaman budidaya dan bernilai sosio-kultural yang terkait dengan klasifikasi tempat tumbuhnya. Studi etnobotani tanaman juga dilaporkan di komunitas Hindu desa Jagaraga, Kabupaten Lombok barat, Nusa Tenggara Barat. Eksplorasi juga dilakukan oada mikrobia penghasil senyawa antibiotik yang ditemukan sejumlah 4 isolat aktinomisetes yaitu ACB34a, ACB44c, ACB54c dan ACB55c. Hasil penelitian menunjukkan bahwa keempat isolat tersebut memiliki kesamaan dengan genus Actinomadura, Nocardia, Streptomyces and Actinomadura secara berurutan berdasarkan karakter fenotip dan indeks similaritas menggunakan Clad97.Pada kajian yang lain, aktivitas manusia di ekosistem perairan pantai kawasan kepulauan Spermonde, Makassar Sulawesi Selatan telah berdampak pada pencemaran bahan organic dan selanjutnya meningkatkan diversitas makroalga dan menurunkan diversitas Echinodermata.

Serta kajian aktivitas antibakteri dari nanoemulsi minyak lengkuas dapat digunakan sebagai kandidat pengobatan infeksi lambung yang disebabkan oleh Helicobacer pylori.

Penerbitan edisi ini juga atas kerja keras dan perhatian banyak pihak, oleh karena itu redaksi Biotropika: Journal of Tropical Biology mengucapkan terima kasih kepada para mitra bestari yang berkenan memberikan masukan dan kritik untuk peningkatan kualitas tulisan.

Para anggota redaksi yang telah meluangkan waktunya agar edisi ini dapat terbit dengan baik. Semoga tulisan-tulisan dalam jurnal ini dapat bermanfaat bagi pembaca dan menjadi rujukan untuk penelitian-penelitian berikutnya.

Hormat kami, Dewan redaksi

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Editorial Team ... i

Preface ... iii

Table of Contents... iv

Keanekaragaman Moluska di Pantai Pasir Putih Lampung Selatan ...87

Identifikasi Jenis Ikan Mudskipper di Pantai Surabaya dan Sidoarjo ...95

Ethnobotanical Study of Plant in Historical-Religious Tourism Area and the Sacred Place at Sumenep, Madura ...102

Karakterisasi Fenotip dan Indeks Similaritas Isolat Actinomycetes yang Memiliki Kemampuan Antibakteri terhadap Escherichia coli dan Staphylococcus aureus ...112

Studi Etnobotani Tumbuhan Obat Masyarakat Komunitas Hindu Desa Jagaraga, Kabupaten Lombok Barat, Nusa Tenggara Barat ...121

Keterkaitan Aktivitas Manusia dengan Kualitas Ekosistem Perairan Pantai di Kepulauan Spermonde, Makassar, Sulawesi Selatan ...129

Aktivitas Antibakteri Nanoemulsi Minyak Lengkuas (Alpinia galanga L. Willd) dalam Menghambat Pertumbuhan Helicobacter pylori ...136 Author guideline ………. App 1