These findings support the need to unveil the indigenous S. cerevisiae population of specific areas and explore its natural biodiversity in order to produce valuable wines styles. The natural biodiversity of grape berries, grape juice, and winery environment, well correlated to each specific terroir, show a unique composition and represent great resources to winemaking. In fact, this work demonstrated that indigenous microorganisms are better adapted to the “chemical environment” of the grape must coming from a specific wine- producing area. The use of these strains as specific starter cultures can give distinct regional characteristics to wines. This suggests that safeguarding and exploiting natural biodiversity can allow the development of modern winemaking practices and the diversification of wine production, with tangible economic imperatives.
AUTHOR CONTRIBUTIONS
AC contributed to the design of the work, to the molecular characterization of yeasts, to the interpretation of data for the work, to draft the work and revising it; LG contributed to the design of the work, to the interpretation of data for the work, to draft the work and revising it; SG contributed to the molecular characterization of yeasts, to statistical analysis of data and to the interpretation of data for the work; SM contributed to chemical analysis of must and experimental wines, to statistical elaboration of data, RR contributed to the molecular characterization of yeasts, to the management of experimental fermentation, to the statistical elaboration of data; MV contributed to the design of the work, to the draft of the work and revising it, PR contributed to the design of the work, to the draft of the work and revising it, and ensured that that questions related to the accuracy or integrity of any part of the work were appropriately investigated and resolved.
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Conflict of Interest Statement: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Copyright © 2016 Capece, Granchi, Guerrini, Mangani, Romaniello, Vincenzini and Romano. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
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REVIEW published: 14 April 2016 doi: 10.3389/fmicb.2016.00503
Edited by:
Giuseppe Spano, University of Foggia, Italy
Reviewed by:
Maurizio Ciani, Università Politecnica delle Marche, Italy Francesco Grieco, National Research Council, Italy Isabel Pardo, University of Valencia, Spain
*Correspondence:
Marilena Budroni [email protected]
Specialty section:
This article was submitted to Food Microbiology, a section of the journal Frontiers in Microbiology
Received:12 February 2016 Accepted:29 March 2016 Published:14 April 2016
Citation:
Legras J-L, Moreno-Garcia J, Zara S, Zara G, Garcia-Martinez T, Mauricio JC, Mannazzu I, Coi AL, Bou Zeidan M, Dequin S, Moreno J and Budroni M (2016) Flor Yeast: New Perspectives Beyond Wine Aging.
Front. Microbiol. 7:503.
doi: 10.3389/fmicb.2016.00503
Flor Yeast: New Perspectives Beyond Wine Aging
Jean-Luc Legras1, Jaime Moreno-Garcia2, Severino Zara3, Giacomo Zara3, Teresa Garcia-Martinez2, Juan C. Mauricio2, Ilaria Mannazzu3, Anna L. Coi3, Marc Bou Zeidan4, Sylvie Dequin1, Juan Moreno5and Marilena Budroni3*
1SPO, Institut National de la Recherche Agronomique – SupAgro, Université de Montpellier, Montpellier, France,
2Department of Microbiology, Agrifood Campus of International Excellence ceiA3, University of Cordoba, Cordoba, Spain,
3Department of Agricultural Sciences, University of Sassari, Sassari, Italy,4Department of Agri-Food Sciences, Holy Spirit University of Kaslik, Jounieh, Lebanon,5Department of Agricultural Chemistry, Agrifood Campus of International Excellence ceiA3, University of Cordoba, Cordoba, Spain
The most important dogma in white-wine production is the preservation of the wine aroma and the limitation of the oxidative action of oxygen. In contrast, the aging of Sherry and Sherry-like wines is an aerobic process that depends on the oxidative activity of flor strains of Saccharomyces cerevisiae. Under depletion of nitrogen and fermentable carbon sources, these yeast produce aggregates of floating cells and form an air–liquid biofilm on the wine surface, which is also known as velum or flor. This behavior is due to genetic and metabolic peculiarities that differentiate flor yeast from other wine yeast. This review will focus first on the most updated data obtained through the analysis of flor yeast with -omic tools. Comparative genomics, proteomics, and metabolomics of flor and wine yeast strains are shedding new light on several features of these special yeast, and in particular, they have revealed the extent of proteome remodeling imposed by the biofilm life-style. Finally, new insights in terms of promotion and inhibition of biofilm formation through small molecules, amino acids, and di/tri- peptides, and novel possibilities for the exploitation of biofilm immobilization within a fungal hyphae framework, will be discussed.
Keywords: flor yeast, wine, biofilm, -omic tools, immobilization, biofilm management, biocapsules
INTRODUCTION
Saccharomyces cerevisiaeflor yeast are responsible for the biological aging of Sherry and Sherry- like wines. The main feature of these yeast is that at the end of alcoholic fermentation, when they are under nitrogen and sugar depletion, they shift from fermentative to oxidative metabolism (i.e., the diauxic shift) and rise to the wine surface to form multicellular aggregates. This aggregation leads to the build-up of a biofilm, or velum or flor (Esteve-Zarzoso et al., 2001;Aranda et al., 2002;
Alexander, 2013).
Biofilm formation is strongly dependent on the nutritional status of the wine. It is well known that biofilm starts when the concentration of any fermentable carbon source is imperceptible or null (Martínez et al., 1997a). In addition, the presence of other carbon sources, such as glycerol and ethyl acetate, can induce biofilm formation (Zara et al., 2010). Thus, biofilm formation is not limited to aerobic growth on ethanol, but occurs also on other reduced non-fermentable carbon sources that provide sufficient energy input. Moreover, biofilm formation is affected by the availability of nitrogen. It has been shown that in wine lacking nitrogen sources, the flor yeast do not form a
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Legras et al. -Omics Advances and Exploitation of Flor Yeasts
biofilm, and that the addition of amino acids to the medium does not induce biofilm formation (Mauricio et al., 2001; Berlanga et al., 2006). Zara et al. (2011)reported that biofilm formation is favored by addition of 37.5 mM ammonium sulfate, while when these concentrations exceed 150 mM, biofilm formation is prevented.
During biofilm growth, the lack of fermentable carbon sources and the availability of oxygen induce cells to maintain aerobic metabolism, which results in important changes to the wine sensorial and aromatic properties, and to its chemical composition. These changes include a reduction of the volatile acidity due to the metabolism of acetic acid, and production of acetaldehyde at the expense of ethanol. Moreover, acetaldehyde by-products provide the distinctive flavor of Sherry and Sherry- like wines, such as 1,1-diethoxyethane and sotolon (Dubois et al., 1976;Guichard et al., 1992;Moreno et al., 2005;Zea et al., 2015).
Oxidative metabolism is essential to allow flor strains to remain at the wine surface; indeed,Jiménez and Benítez (1988) demonstrated that florpetitemutants cannot form biofilm and are more sensitive to ethanol. Furthermore, sensitivity to ethanol is inversely correlated with rate of biofilm formation, where the less resistant strains produce the biofilm more rapidly (Martínez et al., 1997b).
The ability of S. cerevisiae to adapt to environmental and nutritional changes depends on the activation of metabolic pathways that induce the expression of specific genes. For biofilm formation, expression of theFLO11gene has been shown to be the key event. Indeed, the increased expression ofFLO11during the diauxic shift results in higher cell-surface hydrophobicity.
This encourages the formation of multicellular aggregates that entrap CO2 bubbles deriving from the fermentation of the residual sugar, thus providing the buoyancy to the aggregates, and therefore promoting biofilm formation (Zara et al., 2005) (Figure 1). Activation of FLO11 depends on three specific pathways: the cAMP-protein kinase A (PKA) pathway; the mitogen-activated protein kinase (MAPK) pathway; and the TOR pathway (Braus et al., 2003; Vinod et al., 2008). It has been shown that in biofilm-inducing media, biofilm formation and FLO11transcription can be significantly reduced by the addition of rapamycin, which is a well-known inhibitor of the TOR pathway, and the deletion ofRAS2,which regulates the PKA and MAPK pathways (Zara et al., 2011). Finally, the expansion of minisatellites within the central domain ofFLO11contributes to increased protein glycosylation and hydrophobicity of the Flo11 glycoprotein (Flo11p) of flor yeast (Reynolds and Fink, 2001;Zara et al., 2005;Fidalgo et al., 2006).
As well as the role ofFLO11in the rising of cells and in their hydrophobicity, biofilm formation appears to be dependent on increased cell buoyancy. This is influenced by their lipid content and composition, as flor strains have greater chain lengths and unsaturation levels of their fatty-acid residues than those shown by non-biofilm-forming strains of S. cerevisiae (Farris et al., 1993; Zara et al., 2009). Addition of cerulenin, which is an antibiotic that inhibits de-novo fatty-acid biosynthesis, results in a dramatic reduction in FLO11 transcription levels and biofilm weight of flor yeast grown in biofilm-inducing media (Zara et al., 2012). Inositol availability also affects biofilm
formation, possibly due to its key role in the assembly of the glycosylphosphatidylinositol anchor of Flo11p, and in the regulation of lipid biosynthetic genes, such asACC1(Zara et al., 2012).
Due to their metabolic and genetic peculiarities, flor strains can overcome stress caused by high ethanol and acetaldehyde contents in Sherry and Sherry-like wines (Budroni et al., 2005).
It has been hypothesized that this adaptive ability is related to DNA mutations caused by acetaldehyde, such as double-strand breaks (Ristow et al., 1995). These mutations are considered to be responsible for mitochondrial DNA polymorphism (Castrejon et al., 2002) and for gross chromosomal rearrangements in flor yeast (Infante et al., 2003). The complexity and specificity of the flor yeast genome make these strains an interesting model for studies into speciation ofS. cerevisiaeand into adaptive evolution based on mutations in theFLO11gene (Fidalgo et al., 2006).
Considering that comparative genomics, proteomics and metabolomics of flor and wine yeast strains are shedding new light on several features of these special yeast, in this review we will discuss the most recent data obtained through the analysis of flor yeast with -omic tools. Moreover, we will report on new insights in terms of promotion and inhibition of biofilm formation through small molecules, amino acids and di/tri- peptides, and on novel possibilities for the exploitation of yeast immobilization within a fungal hyphae framework.