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Lampiran 1 Runutan basa nukleotida gen CP CMV-S isolat Cikarawang (Ckrw), Bogor Barat (Bgr-Brt), Cirebon (Crb), Bantul (Btl), dan Ponorogo (Png) dengan isolat dari negara lain yang terdaftar di GenBank. Tanda* (bintang) menunjukkan basa nukleotida yang identik
Isolat ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 5 15 25 35 45 55 CMV-Ckrw CGTAGCCGTC GACGTCGTCC GCGTCGCGGT TCCCGCTCCG CTCCCTCCTC CGCGGATGCT CMV-Bgr-Brt CGTAGCCGTC GACGTCGTCC GCGTCGCGGT TCCCGCTCCG CTCCCTCCTC CGCGGATGCT CMV-Crb CGTAGCCGTC GACGTCGTCC GCGTCGCGGT TCCCGCTCCG CTCCCTCCTC CGCGGATGCT CMV-Btl CGTAGCCGTC GACGTCGTCC GCGTCGCGGT TCCCGCTCCG CTCCCTCCTC CGCGGATGCT CMV-Png CGTAGCCGTC GACGTCGTCC GCGTCGCGGT TCCCGCTCCG CTCCCTCCTC CGCGGATGCT CMV-IDN CGTAGCCGTC GACGTCGTCC GCGTCGCGGT TCCCGCTCCG CTCCCTCCTC CGCGGATGCT CMV-USA CGTAATCGTC GACGTCGTCC GCGTCGTGGT TCCCGCTCCG CTCCCTCCTC CGCGGATGCT CMV-IND CGTAATCGTC GACGTCGTCC GCGTCGTGGT TCCCGCTCCG CTCCCTCCTC CGCGGATGCT CMV-IND CGTAACCGTC GACGTCGTCC GCGTCGTGGT TCCCGCTCCG CTCTCTCCTC CGCGGATGCT CMV-MAS CGCAATCGTC GACGTCGTCC GCGTCGTGGT TCCCGCTCCG CTTTCTCCTC TGCGGATGCT CMV-ITA CGTAATCGTC GACGTCGTCC GCGTCGTGGT TCCCGCTCCG CTCCCTCCTC CGCGGATGCT CMV-THA CGTAACCGTC GACGTCGTCC GCGTCGTGGT TCCCGCTCCG CTTCCTCCTC CGCGGATGCT PSV-POL CGCAGCCATC GACGATATCT GTCCTATGAC CCAAAATCCA TCTCAGTCAC CGCGGTTCTG Clustal Co ** * * ** **** ** * * * *** * * **** * ....|....| ....|....| ....|....| ....|....| ....|....| ....|....|
65 75 85 95 105 115 CMV-Ckrw AACATTAGAG GTCTGTCGCA GCAACTTTCG CGGCTTAACA AGACGTTAGC AGCTGGTCGT
CMV-Bgr-Brt AACATTAGAG GTCTGTCGCA GCAACTTTCG CGGCTTAACA AGACGTTAGC AGCTGGTCGT CMV-Crb AACATTAGAG GTCTGTCGCA GCAACTTTCG CGGCTTAACA AGACGTTAGC AGCTGGTCGT CMV-Btl AACATTAGAG GTCTGTCGCA GCAACTTTCG CGGCTTAACA AGACGTTAGC AGCTGGTCGT CMV-Png AACATTAGAG GTCTGTCGCA GCAACTTTCG CGGCTTAACA AGACGTTAGC AGCTGGTCGT CMV-IDN AACATTAGAG GTCTGTCGCA GCAACTTTCG CGGCTTAACA AGACGTTAGC AGCTGGTCGT CMV-USA AACTTTAGAG TCTTGTCGCA GCAGCTTTCG CGACTTAACA AGACGTTAGC AGCTGGTCGT CMV-IND AACTTTAGAG TCTTGTCGCA GCAGCTTTCG CGACTTAACA AGACGTTAGC AGCTGGTCGT CMV-IND ACGTTTAGAG TTCTGTCGCA ACAGCTTTCG CGACTTAATA AAACTTTAGC AGCTGGTCGT CMV-MAS ACTTTTAGAG TCTTGTCGCA ACAGCTTTCG CGACTCAATA AGACATTAGC AGCTGGTCGT CMV-ITA AACTTTAGAG TCTTGTCGCA GCAGCTTTCG CGACTTAATA AGACGTTAGC AGCTGGTCGT CMV-TTHA ACTTTCAGAG TCTTGTCGCA GCAGCTTTCG CGACTTAATA AGACATTAGC AGCTGGTCGT PSV-POL GATCCTGGAG GTCGGTCAAA CTGAGCCTTC TGAACCCCCT GAGCTTAAGT CCCTATCCTT Clustal Co *** *** * * * * * ** ** * * ....|....| ....|....| ....|....| ....|....| ....|....| ....|....|
125 135 145 155 165 175 CMV-Ckrw CCTACTCTTA ACCACCCAAC CTTTGTGGGG AGTGAACGTT GTAAACCTGG GTACACGTTC
CMV-Bgr-Brt CCTACTCTTA ACCACCCAAC CTTTGTGGGG AGTGAACGTT GTAAACCTGG GTACACGTTC CMV-Crb CCTACTCTTA ACCACCCAAC CTTTGTGGGG AGTGAACGTT GTAAACCTGG GTACACGTTC CMV-Btl CCTACTCTTA ACCACCCAAC CTTTGTGGGG AGTGAACGTT GTAAACCTGG GTACACGTTC CMV-Png CCTACTCTTA ACCACCCAAC CTTTGTGGGG AGTGAACGTT GTAAACCTGG GTACACGTTC CMV-IDN CCTACTCTTA ACCACCCAAC CTTTGTGGGG AGTGAACGTT GTAAACCTGG GTACACGTTC CMV-USA CCAACTATTA ACCACCCAAC CTTTGTGGGT AGTGAACGCT GTAAACCTGG GTACACGTTC CMV-IND CCAACTATTA ACCACCCAAC CTTTGTGGGT AGTGAACGCT GTAAACCTGG GTACACGTTC CMV-IND CCTACTATTA ACCACCCAAC CTTTGTGGGT AGTGAACGTT GTAAACCTGG ATACACGTTC CMV-MAS CCAACTATTA ACCACCCAAC CTTTGTGGGT AGTGAGCGCT GTAAACCTGG ATACACGTTC CMV-ITA CCAACTATTA ACCACCCAAC CTTTGTGGGT AGTGAACGCT GTAAACCTGG GTACACGTTC CMV-THA CCAACTATTA ACCACCCAAC CTTTGTGGGT AGTGAGCGTT GTAAACCTGG ATACACGTTC PSV-POL CCAAACCAAA TCCCCTGACG CCCGGTTAGC CGAGAGAGCT GCCGCCATGG GAATACGTCG Clustal Co ** * * ** * * * ** * * ** * * * * *** * ****
43 Lampiran 1 (lanjutan)
Isolat ....|....| ....|....| ....|....| ....|....| ....|....| ....|....|
185 195 205 215 225 235 CMV-Ckrw ACATCTATTA CCCTGAAGCC GCCGAAAATA GACCGTGGGT CTTATTATGG CAAAAGGTTG
CMV-Bgr-Brt ACATCTATTA CCCTGAAGCC GCCGAAAATA GACCGTGGGT CTTATTATGG CAAAAGGTTG CMV-Crb ACATCTATTA CCCTGAAGCC GCCGAAAATA GACCGTGGGT CTTATTATGG CAAAAGGTTG CMV-Btl ACATCTATTA CCCTGAAGCC GCCGAAAATA GACCGTGGGT CTTATTATGG CAAAAGGTTG CMV-Png ACATCTATTA CCCTGAAGCC GCCGAAAATA GACCGTGGGT CTTATTATGG CAAAAGGTTG CMV-IDN ACATCTATTA CCCTGAAGCC GCCGAAAATA GACCGTGGGT CTTATTATGG CAAAAGGTTG CMV-USA ACATCTATTA CCCTGAAGCC GCCGAAAATA GACCGCGGGT CTTATTATGG TAAAAGGTTG CMV-IND ACATCTATTA CCCTGAAGCC GCCGAAAATA GACCGCGGGT CTTATTATGG TAAAAGGTTG CMV-IND ACCTCGATTA CCCTGAAGCC ACCAAAAATA GACCGAGGGT CTTATTATGG TAAAAGGTTG CMV-MAS ACATCTATTA CCCTGAAGCC ACCAAAAATA GACCGTGGGT CTTATTATGG TAAAAGGTTG CMV-ITA ACATCTATTA CCCTGAAGCC GCCGAAAATA GACCGCGGGT CTTATTATGG TAAAAGGTTG CMV-THA ACATCTATTA CCCTGAAACC ACCGAAAATA GACCGTGGGT CTTATTATGG TAAAAGGTTG PSV-POL GCGTCAGCTG TATCGGAACC ATTTCGAATC TTCAACGTAT TTGGTTTCAG CTGGTGGTGA Clustal Co * ** * * * ** *** * * * * ** * *** ....|....| ....|....| ....|....| ....|....| ....|....| ....|....|
245 255 265 275 285 295 CMV-Ckrw TTGCTACCTG ATTCAGTCAC GGATTTCGAT AAGAAACTTG TTTCGCGCAT TCAAATTCGC
CMV-Bgr-Brt TTGCTACCTG ATTCAGTCAC GGATTTCGAT AAGAAACTTG TTTCGCGCAT TCAAATTCGC CMV-Crb TTGCTACCTG ATTCAGTCAC GGATTTCGAT AAGAAACTTG TTTCGCGCAT TCAAATTCGC CMV-Btl TTGCTACCTG ATTCAGTCAC GGATTTCGAT AAGAAACTTG TTTCGCGCAT TCAAATTCGC CMV-Png TTGCTACCTG ATTCAGTCAC GGATTTCGAT AAGAAACTTG TTTCGCGCAT TCAAATTCGC CMV-IDN TTGCTACCTG ATTCAGTCAC GGATTTCGAT AAGAAACTTG TTTCGCGCAT TCAAATTCGC CMV-USA TTGCTACCTG ATTCAGTCAC GGAGTTCGAT AAGAAGCTTG TTTCGCGCAT TCAAATTCGA CMV-IND TTGCTACCTG ATTCAGTCAC GGAGTTCGAT AAGAAGCTTG TTTCGCGCAT TCAAATTCGA CMV-IND TTACTTCCTG ATTCAGTCAC TGAGTTCGAT AAGAAGCTTG TTTCGCGCAT TCAAATTCGA CMV-MAS TTGCTACCTG ATTCAGTCAC GGAATTCGAT AAGAAGCTTG TTTCGCGCAT TCAAATTCGA CMV-ITA TTGCTACCTG ATTCAGTCAC GGAGTTCGAT AAGAAGCTTG TTTCGCGCAT TCAAATTCGA CMV-THA TTGCTACCTG ATTCAGTCAC GGAGTTCGAT AAGAAGCTTG TTTCGCGCAT TCAAATTCGA PSV-POL TTTTTCAACG AA-CAGAC-T GGAGGGTAAT TTAAAATTCG TGTTTGACAC TTATTTCTTA Clustal Co ** * * * *** * ** ** ** * * * * ** * * * ....|....| ....|....| ....|....| ....|....| ....|....| ....|....|
305 315 325 335 345 355 CMV-Ckrw GTTAATCCGC TGCCGAAATT TGATTCTACC GTGTGGTTGA CAGTCCGTAA AGTTCCTGCC
CMV-Bgr-Brt GTTAATCCGC TGCCGAAATT TGATTCTACC GTGTGGTTGA CAGTCCGTAA AGTTCCTGCC CMV-Crb GTTAATCCGC TGCCGAAATT TGATTCTACC GTGTGGTTGA CAGTCCGTAA AGTTCCTGCC CMV-Btl GTTAATCCGC TGCCGAAATT TGATTCTACC GTGTGGTTGA CAGTCCGTAA AGTTCCTGCC CMV-Png GTTAATCCGC TGCCGAAATT TGATTCTACC GTGTGGTTGA CAGTCCGTAA AGTTCCTGCC CMV-Bgr GTTAATCCGC TGCCGAAATT TGATTCTACC GTGTGGTTGA CAGTCCGTAA AGTTCCTGCC CMV-USA GTTAATCCTT TGCCGAAATT TGATTCTACC GTGTGGGTGA CAGTCCGTAA AGTTCCTGCC CMV-IDN GTTAATCCTT TGCCGAAATT TGATTCTACC GTGTGGGTGA CAGTCCGTAA AGTTCCTGCC CMV-IND GTTAATCCTT TGCCGAAATT TGATTCTACC GTGTGGGTGA CGGTCCGCAA AGTTCCTGCC CMV-MAS GTTAATCCTT TGCCGAAATT TGATTCTACC GTGTGGGTGA CAGTCCGGAA AGTTCCTGCC CMV-ITA GTTAATCCTT TGCCGAAATT TGATTCTACC GTGTGGGTGA CAGTCCGTAA AGTTCCTGCC CMV-THA GTTAATCCTT TGCCGAAATT TGATTCTACC GTGTGGGTGA CAGTCCGGAA AGTTCCTGCC PSV-POL ACCGATCCTC TGGTCAATGT TCACTTTTCT A-GCGGGAGA TGGTGCGCCC CGTTCCAGCG Clustal Co **** ** ** * * * * * * * ** ** ** ** ***** **
44
Lampiran 1 (lanjutan)
Isolat ....|....| ....|....| ....|....| ....|....| ....|....| ....|....|
365 375 385 395 405 415 CMV-Ckrw TCTGCGGACT TATCCGTTGC CGCCATTTCC ACTGTGTTTG CGGACGGAGA ATCGCCGGTA