RIWAYAT HIDUP

Penulis dilahirkan di Jakarta pada tanggal 08 Desember 1990. Penulis merupakan anak kedua dari 4 bersaudara pasangan Bapak Djaelani dan Ibu Alfianti. Pada tahun 2009 penulis lulus dari SMA Negeri 6 Bogor. Pada bulan Juli 2009 penulis resmi menjadi mahasiswa Institut Pertanian Bogor melalui jalur PMDK. Setelah menyelesaikan Tingkat I (Tingkat Persiapan Bersama) di IPB pada tahun 2010, penulis diterima sebagai mahasiswa Departemen Ilmu Komputer, Fakultas Matematika dan Ilmu Pengetahuan Alam.

Selama menjadi mahasiswa di Institut Pertanian Bogor penulis juga aktif mengikuti kompetisi-kompetisi antara lain Alpha Innovation di Universitas Bina Nusantara dan program kreativitas mahasiswa yang diselenggarakan oleh DIKTI. Pada tahun 2012 penulis pernah menjalankan praktik lapangan di Badan Pemeriksa Keuangan Republik Indonesia (BPK-RI) selama kurang lebih 2 bulan.

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LAMPIRAN

Lampiran 1 Daftar 381 organisme yang termasuk ke dalam 48 genus

Spesies Genus ^Jumlah

Fragmen

Bacillus amyloliquefaciens FZB42'

Bacillus 587

Bacillus anthracis str. 'Ames Ancestor'' Bacillus anthracis str. Ames chromosome' Bacillus anthracis str. Sterne chromosome' Bacillus cereus ATCC 10987 chromosome' Bacillus cereus ATCC 14579'

Bacillus cereus E33L'

Bacillus cereus subsp. cytotoxis NVH 391-98' Bacillus clausii KSM-K16'

Bacillus halodurans C-125 chromosome' Bacillus licheniformis ATCC 14580'

Bacillus subtilis subsp. subtilis str. 168 chromosome'

Bacillus thuringiensis serovar konkukian str. 97-27 chromosome' Bacillus thuringiensis str. Al Hakam chromosome'

Bacillus weihenstephanensis KBAB4'

Bacteroides fragilis NCTC 9343 chromosome' Bacteroides fragilis YCH46 chromosome'

Bacteroides thetaiotaomicron VPI-5482 chromosome'

Bacteroides vulgatus ATCC 8482 chromosome' Bacteroides 178

Bartonella bacilliformis KC583' Bartonella henselae str. Houston-1' Bartonella quintana str. Toulouse'

Bartonella tribocorum CIP 105476' Bartonella 76

Bordetella avium 197N chromosome' Bordetella bronchiseptica RB50' Bordetella parapertussis 12822' Bordetella pertussis Tohama I'

Bordetella petrii DSM 12804' Bordetella 187

Borrelia afzelii PKo' Borrelia duttonii Ly'

Borrelia garinii PBi chromosome chromosome linear' Borrelia hermsii DAH chromosome'

Borrelia recurrentis A1'

Borrelia turicatae 91E135 chromosome' Borrelia 43

Bradyrhizobium japonicum USDA 110 chromosome' Bradyrhizobium sp. BTAi1 chromosome'

Bradyrhizobium sp. ORS278 chromosome' Bradyrhizobium 188

Brucella abortus S19 chromosome 1'

25 Brucella canis ATCC 23365 chromosome I'

Brucella melitensis biovar Abortus 2308 chromosome I Brucella melitensis bv. 1 str. 16M chromosome chromosome I' Brucella ovis ATCC 25840 chromosome chromosome I' Brucella suis 1330 chromosome chromosome I'

Brucella suis ATCC 23445 chromosome I' Brucella 139

Burkholderia ambifaria AMMD chromosome chromosome 1' Burkholderia ambifaria MC40-6 chromosome chromosome 1' Burkholderia cenocepacia AU 1054 chromosome 3'

Burkholderia cenocepacia HI2424 chromosome chromosome 1' Burkholderia cenocepacia J2315 chromosome chromosome 1' Burkholderia cenocepacia MC0-3 chromosome chromosome 1' Burkholderia mallei ATCC 23344 chromosome chromosome 1' Burkholderia mallei NCTC 10229 chromosome I'

Burkholderia mallei NCTC 10247 chromosome I' Burkholderia mallei SAVP1 chromosome I'

Burkholderia multivorans ATCC 17616 chromosome chromosome 1' Burkholderia phymatum STM815 chromosome chromosome 1' Burkholderia phytofirmans PsJN chromosome chromosome 1' Burkholderia pseudomallei 1106a chromosome I'

Burkholderia pseudomallei 1710b chromosome chromosome I' Burkholderia pseudomallei 668 chromosome I'

Burkholderia pseudomallei K96243 chromosome chromosome 1' Burkholderia sp. 383 chromosome 1'

Burkholderia sp. 383 chromosome chromosome 2'

Burkholderia thailandensis E264 chromosome chromosome I' Burkholderia vietnamiensis G4 chromosome chromosome 1'

Burkholderia xenovorans LB400 chromosome 1' Burkholderia 612

Campylobacter concisus 13826'

Campylobacter curvus 525.92 chromosome' Campylobacter fetus subsp. fetus 82-40' Campylobacter hominis ATCC BAA-381' Campylobacter jejuni RM1221'

Campylobacter jejuni subsp. doylei 269.97'

Campylobacter jejuni subsp. jejuni NCTC 11168 chromosome' Campylobacter 94

Candidatus Phytoplasma australiense' Candidatus Phytoplasma mali'

Onion yellows phytoplasma OY-M' Candidatus 17

Chlamydophila abortus S26/3' Chlamydophila caviae GPIC' Chlamydophila felis Fe/C-56' Chlamydophila pneumoniae AR39' Chlamydophila pneumoniae CWL029' Chlamydophila pneumoniae J138'

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Chlamydophila pneumoniae TW-183' Chlamydophila 74

Chlorobium chlorochromatii CaD3 chromosome' Chlorobium limicola DSM 245 chromosome' Chlorobium luteolum DSM 273 chromosome' Chlorobium phaeobacteroides BS1 chromosome' Chlorobium phaeobacteroides DSM 266 chromosome' Chlorobium phaeovibrioides DSM 265 chromosome'

Chlorobium tepidum TLS' Chlorobium 164

Clostridium acetobutylicum ATCC 824'

Clostridium beijerinckii NCIMB 8052 chromosome' Clostridium botulinum A str. ATCC 19397'

Clostridium botulinum A str. ATCC 3502' Clostridium botulinum A str. Hall'

Clostridium botulinum A3 str. Loch Maree' Clostridium botulinum B str. Eklund 17B' Clostridium botulinum B1 str. Okra' Clostridium botulinum E3 str. Alaska E43' Clostridium botulinum F str. Langeland' Clostridium difficile 630 chromosome' Clostridium kluyveri DSM 555' Clostridium novyi NT'

Clostridium perfringens ATCC 13124' Clostridium perfringens str. 13' Clostridium phytofermentans ISDg' Clostridium tetani E88 chromosome'

Clostridium thermocellum ATCC 27405 chromosome' Clostridium 511

Corynebacterium diphtheriae NCTC 13129 chromosome' Corynebacterium efficiens YS-314'

Corynebacterium glutamicum ATCC 13032' Corynebacterium glutamicum R chromosome' Corynebacterium jeikeium K411'

Corynebacterium urealyticum DSM 7109' Corynebacterium 137

Cupriavidus metallidurans CH34 chromosome' Cupriavidus necator N-1 chromosome chromosome 1'

Cupriavidus taiwanensis LMG 19424 chromosome 1' Cupriavidus 81

Dehalococcoides ethenogenes 195' Dehalococcoides sp. BAV1'

Dehalococcoides sp. CBDB1 chromosome' Dehalococcoides 36

Ehrlichia canis str. Jake'

Ehrlichia chaffeensis str. Arkansas' Ehrlichia ruminantium str. Gardel'

Ehrlichia ruminantium str. Welgevonden' Ehrlichia 35

Francisella philomiragia subsp. philomiragia ATCC 25017 chromosome' Francisella tularensis subsp. holarctica FTNF002-00

27 Francisella tularensis subsp. holarctica LVS chromosome'

Francisella tularensis subsp. holarctica OSU18' Francisella tularensis subsp. mediasiatica FSC147' Francisella tularensis subsp. novicida U112' Francisella tularensis subsp. tularensis FSC198' Francisella tularensis subsp. tularensis SCHU S4'

Francisella tularensis subsp. tularensis WY96-3418' Francisella 117

Frankia alni ACN14a chromosome' Frankia sp. CcI3 chromosome'

Frankia sp. EAN1pec chromosome' Frankia 183

Geobacter bemidjiensis Bem chromosome' Geobacter lovleyi SZ chromosome'

Geobacter metallireducens GS-15 chromosome' Geobacter sulfurreducens PCA chromosome'

Geobacter uraniireducens Rf4 chromosome' Geobacter 171

Haemophilus ducreyi 35000HP'

Haemophilus influenzae 86-028NP chromosome' Haemophilus influenzae PittEE chromosome' Haemophilus influenzae PittGG chromosome' Haemophilus influenzae Rd KW20 chromosome' Haemophilus somnus 129PT chromosome'

Haemophilus somnus 2336 chromosome' Haemophilus 116

Helicobacter acinonychis str. Sheeba chromosome' Helicobacter hepaticus ATCC 51449 chromosome' Helicobacter pylori 26695'

Helicobacter pylori G27 chromosome' Helicobacter pylori HPAG1 chromosome' Helicobacter pylori J99'

Helicobacter pylori P12 chromosome'

Helicobacter pylori Shi470 chromosome' Helicobacter 102

Lactobacillus acidophilus NCFM chromosome' Lactobacillus brevis ATCC 367'

Lactobacillus casei ATCC 334' Lactobacillus casei BL23 chromosome'

Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842'

Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 chromosome' Lactobacillus fermentum IFO 3956'

Lactobacillus gasseri ATCC 33323' Lactobacillus helveticus DPC 4571' Lactobacillus johnsonii NCC 533' Lactobacillus plantarum WCFS1'

Lactobacillus reuteri DSM 20016 chromosome' Lactobacillus reuteri JCM 1112'

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Lactobacillus salivarius UCC118' Lactobacillus 250

Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome chromosome I' Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I' Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1'

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I' Leptospira interrogans serovar Lai str. 56601 chromosome

chromosome I'

Leptospira 161

Listeria innocua Clip11262' Listeria monocytogenes EGD-e'

Listeria monocytogenes serotype 4b str. F2365 chromosome'

Listeria welshimeri serovar 6b str. SLCC5334' Listeria 78

Methanococcus maripaludis C5 chromosome' Methanococcus maripaludis C6 chromosome' Methanococcus maripaludis C7 chromosome'

Methanococcus maripaludis S2 chromosome' Methanococcus 51

Methanosarcina acetivorans C2A chromosome' Methanosarcina barkeri str. Fusaro chromosome'

Methanosarcina mazei Go1 chromosome' Methanosarcina 100

Methylobacterium extorquens PA1 chromosome' Methylobacterium populi BJ001 chromosome'

Methylobacterium radiotolerans JCM 2831 chromosome'

Methylobacterium sp. 4-46 chromosome' Methylobacterium 196

Mycobacterium abscessus ATCC 19977 chromosome chromosome 1' Mycobacterium avium 104'

Mycobacterium avium subsp. paratuberculosis K-10' Mycobacterium bovis AF2122/97'

Mycobacterium bovis BCG str. Pasteur 1173P2' Mycobacterium gilvum PYR-GCK chromosome' Mycobacterium leprae TN chromosome'

Mycobacterium marinum M' Mycobacterium smegmatis str. MC2 155' Mycobacterium sp. JLS chromosome' Mycobacterium sp. KMS chromosome' Mycobacterium sp. MCS chromosome' Mycobacterium tuberculosis CDC1551' Mycobacterium tuberculosis F11' Mycobacterium tuberculosis H37Ra' Mycobacterium tuberculosis H37Rv' Mycobacterium ulcerans Agy99'

Mycobacterium vanbaalenii PYR-1 chromosome' Mycobacterium 723

Mycoplasma agalactiae PG2' Mycoplasma arthritidis 158L3-1'

Mycoplasma capricolum subsp. capricolum ATCC 27343' Mycoplasma gallisepticum str. R(low) chromosome' Mycoplasma genitalium G37'

29 Mycoplasma hyopneumoniae 232'

Mycoplasma hyopneumoniae 7448 chromosome' Mycoplasma hyopneumoniae J chromosome' Mycoplasma mobile 163K'

Mycoplasma mycoides subsp. mycoides SC str. PG1 chromosome'

Mycoplasma penetrans HF-2' Mycoplasma pneumoniae M129' Mycoplasma pulmonis UAB CTIP'

Mycoplasma synoviae 53' Mycoplasma 112

Pseudomonas aeruginosa PA7'

Pseudomonas aeruginosa PAO1 chromosome' Pseudomonas aeruginosa UCBPP-PA14' Pseudomonas fluorescens Pf-5 chromosome' Pseudomonas fluorescens Pf0-1 chromosome' Pseudomonas putida F1 chromosome' Pseudomonas putida GB-1 chromosome' Pseudomonas putida KT2440 chromosome' Pseudomonas putida W619 chromosome'

Pseudomonas syringae pv. phaseolicola 1448A chromosome' Pseudomonas syringae pv. syringae B728a'

Pseudomonas syringae pv. tomato str. DC3000 chromosome' Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A'

Pseudomonas 600

Psychrobacter arcticus 273-4'

Psychrobacter cryohalolentis K5 chromosome'

Psychrobacter sp. PRwf-1 chromosome' Psychrobacter 71

Pyrobaculum aerophilum str. IM2 chromosome' Pyrobaculum arsenaticum DSM 13514'

Pyrobaculum calidifontis JCM 11548 chromosome'

Pyrobaculum islandicum DSM 4184 chromosome' Pyrobaculum 52

Pyrococcus abyssi GE5 chromosome' Pyrococcus furiosus DSM 3638'

Pyrococcus horikoshii OT3 chromosome' Pyrococcus 40

Rickettsia akari str. Hartford' Rickettsia bellii OSU 85-389' Rickettsia bellii RML369-C' Rickettsia canadensis str. McKiel' Rickettsia conorii str. Malish 7' Rickettsia felis URRWXCal2' Rickettsia massiliae MTU5'

Rickettsia prowazekii str. Madrid E chromosome' Rickettsia rickettsii str. 'Sheila Smith''

Rickettsia rickettsii str. Iowa chromosome'

30

Shewanella amazonensis SB2B chromosome' Shewanella baltica OS195 chromosome' Shewanella denitrificans OS217' Shewanella frigidimarina NCIMB 400'

Shewanella halifaxensis HAW-EB4 chromosome' Shewanella loihica PV-4'

Shewanella oneidensis MR-1'

Shewanella pealeana ATCC 700345 chromosome' Shewanella putrefaciens CN-32 chromosome' Shewanella sediminis HAW-EB3'

Shewanella sp. ANA-3 chromosome chromosome 1' Shewanella sp. MR-4 chromosome'

Shewanella sp. MR-7 chromosome' Shewanella sp. W3-18-1 chromosome'

Shewanella woodyi ATCC 51908 chromosome' Shewanella 574

Shigella boydii CDC 3083-94 chromosome' Shigella boydii Sb227'

Shigella dysenteriae Sd197' Shigella flexneri 2a str. 2457T'

Shigella flexneri 2a str. 301 chromosome' Shigella flexneri 5 str. 8401 chromosome'

Shigella sonnei Ss046 chromosome' Shigella 248

Staphylococcus aureus RF122'

Staphylococcus aureus subsp. aureus COL chromosome' Staphylococcus aureus subsp. aureus JH1'

Staphylococcus aureus subsp. aureus JH9'

Staphylococcus aureus subsp. aureus MRSA252 chromosome' Staphylococcus aureus subsp. aureus MSSA476 chromosome' Staphylococcus aureus subsp. aureus MW2'

Staphylococcus aureus subsp. aureus Mu3' Staphylococcus aureus subsp. aureus Mu50' Staphylococcus aureus subsp. aureus N315'

Staphylococcus aureus subsp. aureus NCTC 8325 chromosome' Staphylococcus aureus subsp. aureus USA300_FPR3757 chromosome' Staphylococcus aureus subsp. aureus USA300_TCH1516 chromosome' Staphylococcus aureus subsp. aureus str. Newman chromosome' Staphylococcus epidermidis ATCC 12228 chromosome' Staphylococcus epidermidis RP62A'

Staphylococcus haemolyticus JCSC1435 chromosome' Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305'

Staphylococcus 438

Streptococcus agalactiae 2603V/R' Streptococcus agalactiae A909' Streptococcus agalactiae NEM316'

31 Streptococcus gordonii str. Challis substr. CH1'

Streptococcus mutans UA159 chromosome' Streptococcus pneumoniae CGSP14' Streptococcus pneumoniae D39'

Streptococcus pneumoniae G54 chromosome' Streptococcus pneumoniae Hungary19A-6' Streptococcus pneumoniae R6'

Streptococcus pneumoniae TIGR4 chromosome' Streptococcus pyogenes M1 GAS chromosome' Streptococcus pyogenes MGAS10270 chromosome' Streptococcus pyogenes MGAS10394 chromosome' Streptococcus pyogenes MGAS10750 chromosome' Streptococcus pyogenes MGAS2096 chromosome' Streptococcus pyogenes MGAS315 chromosome' Streptococcus pyogenes MGAS5005 chromosome' Streptococcus pyogenes MGAS6180 chromosome' Streptococcus pyogenes MGAS8232 chromosome' Streptococcus pyogenes MGAS9429 chromosome' Streptococcus pyogenes NZ131 chromosome' Streptococcus pyogenes SSI-1 chromosome' Streptococcus pyogenes str. Manfredo' Streptococcus sanguinis SK36' Streptococcus suis 05ZYH33' Streptococcus suis 98HAH33'

Streptococcus thermophilus CNRZ1066 chromosome' Streptococcus thermophilus LMD-9'

Streptococcus thermophilus LMG 18311 chromosome' Streptococcus 473

Streptomyces avermitilis MA-4680'

Streptomyces coelicolor A3(2) chromosome'

Streptomyces griseus subsp. griseus NBRC 13350' Streptomyces 198

Sulfolobus acidocaldarius DSM 639 chromosome' Sulfolobus solfataricus P2 chromosome'

Sulfolobus tokodaii str. 7 chromosome' Sulfolobus 62

Synechococcus elongatus PCC 6301 chromosome' Synechococcus elongatus PCC 7942 chromosome' Synechococcus sp. CC9311' Synechococcus sp. CC9605' Synechococcus sp. CC9902 chromosome' Synechococcus sp. JA-2-3B'a(2-13)' Synechococcus sp. JA-3-3Ab' Synechococcus sp. PCC 7002 chromosome' Synechococcus sp. RCC307' Synechococcus sp. WH 7803' Synechococcus sp. WH 8102' Synechococcus 203

32

Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome'

Thermoanaerobacter sp. X514 chromosome'

Thermoanaerobacter tengcongensis MB4' Thermoanaerobacter 64

Thermotoga lettingae TMO chromosome' Thermotoga maritima MSB8 chromosome' Thermotoga petrophila RKU-1 chromosome'

Thermotoga sp. RQ2 chromosome' Thermotoga 62

Vibrio cholerae O1 biovar El Tor str. N16961 chromosome chromosome I' Vibrio cholerae O395 chromosome 1'

Vibrio fischeri ES114 chromosome I' Vibrio fischeri MJ11 chromosome I'

Vibrio vulnificus CMCP6 chromosome chromosome I'

Vibrio vulnificus YJ016 chromosome I' Vibrio 120

Wolbachia endosymbiont of Culex quinquefasciatus Pel' Wolbachia endosymbiont of Drosophila melanogaster'

Wolbachia endosymbiont strain TRS of Brugia malayi' Wolbachia 28

Xanthomonas axonopodis pv. citri str. 306 chromosome' Xanthomonas campestris pv. campestris str. 8004 chromosome' Xanthomonas campestris pv. campestris str. ATCC 33913' Xanthomonas campestris pv. campestris str. B100'

Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome' Xanthomonas oryzae pv. oryzae KACC10331 chromosome' Xanthomonas oryzae pv. oryzae MAFF 311018'

Xanthomonas oryzae pv. oryzae PXO99A' Xanthomonas 295

Yersinia enterocolitica subsp. enterocolitica 8081' Yersinia pestis Angola'

Yersinia pestis Antiqua chromosome' Yersinia pestis CO92 chromosome' Yersinia pestis KIM 10 chromosome' Yersinia pestis Nepal516'

Yersinia pestis Pestoides F chromosome' Yersinia pseudotuberculosis IP 31758' Yersinia pseudotuberculosis IP 32953'

Yersinia pseudotuberculosis PB1/+ chromosome'