S BIO 1001113 Bibliography

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Isolasi DNA Genom Bakteri Termofilik Sumber Air Panas Ciengang, Kawah Darajat dan Hydrothermal Vent Kawio

Universitas Pendidikan Indonesia | repository.upi.edu | perpustakaan.upi.edu DAFTAR PUSTAKA

Adibuzel et al. (2010). Molecular diversity of thermofilic bacteria isolated from Pasinler hot spring (Erzurum, Turkey). Turkey Jurnal Biology. 35, 267-274).

Adinaryana K., P. Ellaiah & D.S. Prasad. (2003). Purification and partial characterization of thermostable serine alkaline protease from a newly isolated of Bacillus subtilis PE-11. AAPS Pharmacology Science Technology. 4, 1-9.

Andrade, M., Brown, N., Leroy, C., Hoersch, S., de Daru var, A., Reich, C., Franchini, A. Tamames, J., Valemcia, A., Ouzounis, C., & Sander,

C.(1999). “Automated genome sequence analysis”. Bioinformatics, 15. In press.

Aprilian, R. (2009). Analisis Variasi Genetik Osphronemus gouramy Lac yang Terinfeksi Aeromonas hydrophilla Dengan Penanda Mikrosatelit. (Skripsi). Jurusan Pendidikan Biologi FPMIPA Universitas Pendidikan Indonesia, Bandung.

Artama, W.T.(1991). Rekayasa Genetika. Pusat Antar Universitas-Bioteknologi. UGM. Yogyakarta.

Ausubel, et al. (2003). Current protocols in Molecular Biology. United Kingdom: John Wiley & Sons Ltd Baig M.M.V., Big M.L.B., Yasmaen M. (2004). Saccharification of banana agrowaste by cellulolytic enzymes. Afr J. Biotechnol. 3, hlm. 447-450.

Baig M.M.V., Big M.L.B., Yasmaen M. (2004). Saccharification of banana agrowaste by cellulolytic enzymes. Afr J. Biotechnol. 3, hlm. 447-450.

Bettelheim, F.A., & Landesberg, J. (1984). Laboratory Experiments for General, Organic, & Biochemistry. (edisi keempat). New Jersey: John Wiley & Sons Inc.

Birren,B., E.D. Green, S. Klapholz, R.M. Myers, & J. Roskams. (1997). “Genome

Analysis. A Laboratory manual”. Volume 1. Cold Spring Harbour Laboratory Press.New York. Halaman 621.

Brock, T. D. (1986). Introduction : An Overview of The Thermophiles, in : Thermophiles : General, Molecular & Applied Microbiology Ed. T. D. Brock, John Whilley & Sons. New York.

(2)

Meli, 2014

Isolasi DNA Genom Bakteri Termofilik Sumber Air Panas Ciengang, Kawah Darajat dan Hydrothermal Vent Kawio

Universitas Pendidikan Indonesia | repository.upi.edu | perpustakaan.upi.edu

Campbell et al. (2008). Biology. (edisi kedelapan). San Francisco: Pearson Benjamin Cummings.

Chawla, H. S. (2003). Plant Biotechnology : A Practical Approach. Science Publishers, Inc. Plymouth.

Corkill, G., Rapley, R. (2008). The Manipulation of Nucleic Acids: Basic Tools & Techiques in Molecular Biomethods Handbook Second Edition. Ed: Walker, J.M., Rapley, R. Humana Press, NJ,USA.

Demerdash, Hassan A,M,El. (2012). ”A Simple and Inexpensive Procedure for Chromosomal DNA Extraction from Streptococcus thermophilus Strains”. Middle-East Journal of Scientific Research . 11 (1), hlm 13-18

Dessy, C. S. (2008). “Isolasi Bakteri dan Uji Aktivitas Amilase Termofil Kasar dari Sumber Air Panas Penen Sibirubiru Sumatra Utara”. (Tesis). Medan: Universitas Sumatra Utara.

Edwards, C. (1990). Microbiology of Extreme Environments. New York: Mc Graw- Hill Publishing Company

Facthiyah. (2005). Gel Elektroforesis. Malang: Laboratorium Sentral Biologi Molekuler & Seluler Universitas Brawijaya.

Fatchiyah, (2011). Modul Pelatihan Analisis Fingerprinting DNA Tanaman Dengan Metode RAPD. Laboratorium Sentral Ilmu Hayati Universitas Brawijaya, Malang.

Fardiaz, S. (1989). “Petunjuk Praktikum Analisis Mikrobiologi Pangan”. Bogor: PAU IPB.

Fauziah, L.(2010). “Isolasi DNA”. Available on http://miss-purplepharmacy.blogspot. com/2010/01/isolasi-dna.html. Diakses tanggal 28 november 2012.

Fikrinda. (2000). Isolasi & karakterisasi bakteri penghasil selulase ekstermofilik dari ekosistem air hitam. (tesis). Institut Pertanian Bogor.

Gaffar, S. (2007). Buku Ajar Biologi Molekuler. Jurursan Kimia, Fakultas MIPA. Universitas Padjajaran.

Garbutt, J. (1997). Essentials of Food Microbiology. London: Arnold.

Gati, W.(2011). “Metode Uji Kualitatif Dna Dengan Elektroforesis Gel Agarosa”. Balai Besar Perbenihan & Proteksi Tanaman Perkebunan Surabaya.

Ghosh. (2005). ”Production of Lipase & Phospholipase Enzymes from Pseudomonas sp & Their Action on Phospholipids. Journal of Oleo Science. 54 (7), 407-411

(3)

http://rizzo.springer-Meli, 2014

Isolasi DNA Genom Bakteri Termofilik Sumber Air Panas Ciengang, Kawah Darajat dan Hydrothermal Vent Kawio

Universitas Pendidikan Indonesia | repository.upi.edu | perpustakaan.upi.edu ny.com:6336/dynaweb/verlagprok/prokbook/IDMATCH

(CHP2NDED,6/@BrowserPrint__BookTextView/;uf= 0;ts= chapters;cs= br wprint.

Gupta, H., & Roy, S. (2007). “Geothermal Energy, Elsevier”. Radarweg 29, Amsterdam Netherlands.

Hidayat, T., Samat, M.A.A., Elias, M.A.B., & Hadibrata, T. (2012).

“Metagenomic Analysis of 16 rRNA Sequences from Selected Rivers in

Johor Malaysia”. Jurnal of Applied Sciences. 12 (4): 354-361.

Holden, J.F. (2009). “Extremophiles: Hot Environments”, dalam Encyclopedia of Microbiology (third ed.). Oxford: Elsevier.

Hoelzel, A.R, et al. (1994). “Rapid Evolution of a heteroplasmic repetitive in the Mitochondrial DNA Control Region of Carnivores”. Microbiology & Molecular Biology. 39, hlm. 191-199.

Ibrahim, ASS & El-diwany AI. (2007). Isolation & identification of new cellulases producing thermophilic bacteria from an Egyptian hot spring & some properties of the crude enzyme. J Appl Sci. 1, hlm. 473-478.

Jeanthon, C. (2000). “Molecular ecology of hydrothermal vent microbial communities”. Antonie van Leeuwenhoek. Microbiology & Molecular Biology. 77, hlm. 117–133.

Jude, B. (2012). Agarose Gel Electrophoresis (basic methode). Bard College.

Kalisz, H.M. (1988). Microbial proteinases. In: Biochemical Engineering and Biotecnology, Ed. Fietcher, A., Springer. Berlin.

Karp, Gerald. (2008). Cell and Molecular Biology. (edisi kelima). Wiley.

Kato, et al. (1999). Analyses of microbial diversity in the sediment obtained from Japan Trench at a depth of 7326 m and high pressure cultivation. Biology Molecular, 15, hlm. 47–52.

Keller, G. H & Mark M. M. (1989). DNA Probe. Macmilan: University Michgan.

Kennedy J, Marchesi JR, & Dobson ADW. (2008). Marine Metagenomics: Strategies for the Discovery of Novel Enzymes with Biotechnological Applications from Marine Environments. Microbial Cell Factories, 7 (27).

Kumar, C.G. & H. Tagaki. 1999. Microbial alkaline proteases from a bioindustrial viewpoint. Biotecnology Advance. 17, 561-594.

Lasa, I. & Berenguer, J. (1993). “Thermophilic Enzymes & Their Biotecnological

Potential”. Microbiologia. 9, (2), 77-89.S.

(4)

Meli, 2014

Isolasi DNA Genom Bakteri Termofilik Sumber Air Panas Ciengang, Kawah Darajat dan Hydrothermal Vent Kawio

Lederberg, J. & McCray, A.T. (2001). Ome Sweet ‘Omics—A Genealogical Treasury of Words. The Scientist,15 (7), hlm. 8.

Lewin, B. (2008). “Genes IX (dalam bahasa Inggris). Sudbury: Jones & Bartlett Publishers.

Linacero, R., J. Rueda & A.M.Vazquez. (1998). Quantification of DNA. Pages 18-21 in Karp, A., P. G. Isaac, and D. S. Ingram (Eds.) Molecular Tools for Screening Biodiversity: Plants and Animals. Chapman and Hall. London, Weinheim, New York, Tokyo, Melbourne, Madras.

Longo, M.A., I.S. Isabel, L.A. Gracia & M. Diaz. (1999). Comparison of B. Subtilis and S. Marcescens as pro tease producers under different operating conditions. Journal of Bioscience and Bioengineering. 88, 1, 35-40.

Mader S.S. (1993). Biology. Wm. C Brown Publishers: Lowa

Madigan, M.T., J. M. Martinko & J. Parker. (2000). “Biology of micro organisms”. 9th Ed. Prentice Hall International, Inc., New Jersey.

Mayende L, Wilhelmi BS, Pletschke BI. (2006). Cellulase (CMCase) and polyphenol oxidase from thermophilic Bacillus spp. Isolated from compost. Soil Biol Biochem 38, hlm. 2963-2966.

Middlebeek, E.J., R.O. Jenkins & J.S., & Drijver-de Haas. (1992). “Growth in batch culture. In Vitro Cultivation of Micro-organisms”. Biotechnology by Open Learning.

Milligan, B. G. (1992). “Plant DNA Isolation. In M. G. Murray & W.F.

Thomspon”. Molecular Genetic Analysis of Population.

Nam et al. (2004). Galaktosidase gene of Thermus thermophilus KNOUC 112 isolated from hot springs of a volcano area in New Zealand: identification of bacteria, cloning, & expression of the gene in Escherichia coli. J Anim Sci, 17, hlm. 1591-1598.

Nganro, N. R. (2010).”Habitat Komunitas Fauna Laut Dalam Hydrothermal Vent (HV) & Non-HV di Perairan Sanghie-Talaud, Provinsi Sulawesi

Utara”.Laporan INDEX-SATAL, Bidang Karakterisasi Habitat. 1-20

Niehaus F, Bertoldo, Kahler M, & Antranikian G. (1999). Extremophiles as a source of novel enzymes for industrial application. Applied Microbiol Biotechnol. 51 (6), hlm. 711-729.

Ningrum, E. P. (2008). “Keragaman Gejala & Penyebab Penyakit Keriting

Kuning Cabai”. Fakultas Pertanian Universitas Gadjah Mada. Skripsi.(Tidak

Dipublikasikan)

(5)

Meli, 2014

Isolasi DNA Genom Bakteri Termofilik Sumber Air Panas Ciengang, Kawah Darajat dan Hydrothermal Vent Kawio

Nuroniyah, T. & Putra, S. R. (2012). Identifikasi Spesies Isolat Bakteri S1 dengan Metode Analisa Sekuen Fragmen Gen 16S rDNA. Jurnal Teknik POMITS, 1(1), hlm. 1-6

Nurwati, W. (2010). “Studi Karakteristik Panas Bumi Di Sepanjang Lintasan

Garut-Pangalengan Dengan Metode Magnetotelurik”. Skripsi pada Program Studi Fisika. UPI Bandung: tidak diterbitkan

Pasteur, N, G. Pasteur., F. Bonhomme., J. Catalan., J. Britton. & Davidian.,

(1988). “Practical Isozyme Genetics”. Laboratory of Ecological Ge-netic. University of Montpellier 2. France: 54 pp.

Pelzar MJJr, & Chan ECS. (1986). “Dasar-Dasar Mikrobiologi”. Volume ke-1, 2, Hadioetomo RS, Imas T, Tjitrosomo SS, Angka SL, penerjemah; Jakarta: UI Pr. Terjemahan dari: Elements of Microbiology.

Pierce, B. (2002).”Genetics: A Conceptual Approach”. New Work: W. H. Freeman Ltd.

Prasetyo, A. (2008). “Karakterisasi virus pada tanaman jarak pagar”. Fakultas Pertanian Universitas Gadjah Mada. Skripsi.(Tidak Dipublikasikan).

Prayitno, E. & Nuryandani, E. (2011). Optimalisasi Ekstraksi DNA Jarak Pagar (Jatropha curcas) melalui Pemilihan Daun yang Sesuai. Bioteknologi. 8 (1), hlm. 24-31. Diakses dari www.oalib.com/paper/2740162 [11 November 2014].

Purwantara, A. (2001). “Principles of DNA Isolation & Manipulation”. Workshop on Plant Pathogens Detection by Moleculae Tehniques. 24-26 Januari 2001.

Pratiwi, R. (2001). “Mengenal Metode Elektroforesis”. Oseana. 26, (1), 25-31.

Restiawaty, E., Pertiwi, W., Insani, N., Aryantha, I.N.P., & Natalia, D. (2013). Screening Bakteri untuk Biokonversi Limbah Biodiesel dari Diversitas Bakteri Indonesia. Seminar & Pameran Inovasi & Konstribusi Perempuan Peneliti ITB bagi Industri & Masyarakat. Bandung, Indonesia.

Retnoningrum, D. (2007). “Prinsip Teknologi DNA Rekombinan”. Sekolah farmasi. ITB Bandung.

Ricardson, B. J, P. et al. (1986). Allozyme Electro-phoresis. A Handbook for Animal Sys-tematics & Population Studies. Aca-demic Press, Inc. San Diego : 410 pp.

Riesenfeld, C.S., Schloss P.D., & Handelsman J., (2004). “Metagenomics:

Genomic Analysis of Microbial communities”.Annu. Rev. Genet. 38:525-553

(6)

Meli, 2014

Isolasi DNA Genom Bakteri Termofilik Sumber Air Panas Ciengang, Kawah Darajat dan Hydrothermal Vent Kawio

Sambrook J, Fritsch EF, & Maniatis T. (1989). “Molecular cloning: A laboratory manual”. USA: Cold Spring Harbor Lab ress.

Sambrook, J., & Russel. (2001). Molecular Cloning-A Laboratory Manual. New York: Cold Spring Harbor Laboratory Press.

Sari W.W. (2008). Karakterisasi selulase bakteri asal tanah pertanian Jawa Tengah & Jawa Barat. (skripsi Institut Pertanian Bogor Suryo). (2005). “Genetika”. Yogyakarta: Gadjah Mada University Press.

Suaidah, L. (2010). Analisis Variasi Genetik Osphronemus gouramy Lac Menggunakan Penanda RAPD. (Skripsi). Jurusan Pendidikan Biologi FPMIPA Universitas Pendidikan Indonesia, Bandung.

Scearce, C. (2006). Hydrothermal Vent Communities. [Online]. Diakses dari http://www.csa.com/discoveryguides/discoveryguides-main.php.

Schmeisser, C., Steele, H., Streit, W. R., 2007, Metagenomics: Biotechnology with Non-Culturable Microbes, J.Appl Microbiol Biotechnol., 75:955–962 Shortall C, & Hill C. (2008). Metagenomics. Applied Microbiology. hlm. 361–

366.

Sleator RD, Shortall C, and Hill C. (2008). Metagenomics. Applied Microbiology. hlm. 361– 366.

Steele HL & Streit W R. (2005). Metagenomics: advances in ecology and biotechnology. FEMS Microbiol. Lett., 247, hlm. 105–111.

Suckale, J. (2009). DNA extraction with phenol chloroform. [Online]. Diakses dari

http://openwetware.org/wiki/Image:DNA_extraction_w_phenol_chloroform .jpg

Sudarsono. (1996). “Retricsion Fragmen Length Polymorphism (RFLP)”. Institut Pertanian Bogor. Bogor.ta.

Suharsono & Widyastuti, U. (2006). “Penuntun Praktikum Pelatihan Teknik Pengklonan Gen”. Pusat Penelitian Sumber Daya Hayati & Bioteknologi. Institut Pertanian Bogor.

Surzycki, S. (2000). “Basic Techniques in Molecular Biology”. Spinger-Verlag. Berlin. Heidelberg. New York. [Online]. Diakses dari

http://www.palmta.org/uploads/132561702960108human-Molecular-Biology-Manual.pdf

Suryo. (2005). Genetika. Yogyakarta: Gadjah Mada University Press.

(7)

Meli, 2014

Isolasi DNA Genom Bakteri Termofilik Sumber Air Panas Ciengang, Kawah Darajat dan Hydrothermal Vent Kawio

Toha, A.H.A. (2001). “Deoxyribo Nucleic Acid. Keanekaragaman, Ekspresi, Rekayasa & Efek pemanfaatnnya”. Bandung: Alfabeta.

Tayyab, M.(2010). “Isolation & identification of lipase producing thermophilic Geobacillus sp. SBS-4S: Cloning & characterization of the lipase “. Journal of Bioscience and Bioengineering. No. 3, 272–278.

Triarso, E, Troa, R.A., & Prihantono, J., (2010). “Laporan Akhir Kajian Morfostruktur & Aktivitas Hidrotermal Bawah Laut Kawasan Perairan Sangihe-Talaud, Sulawesi Utara”. Puslitbang Sumberdaya Laut dan Pesisir-Badan Litbang KP, Kementrian Kelautan dan Perikanan (unpublish)

Troa, R.A., Permana, H, Sugiarta, w, Triarso, E, & Sulistio, E., (2011). “Gunung Api Bawah Laut Kawio Barat Perairan Sanghie Sulawesi Utara: aktivitas & Mineralisasi Hidrothermal. Puslitbang Sumberdaya Laut & Pesisir-Badan Litbang KP, Kementrian Kelautan & Perikanan (unpublish)

Uchiyama, T., & Miyazaki, K.. (2009). Functional Metagenomics for Enzyme Discovery: Challenges

Utari, I.B., Fitriani, A, & Hamdiyati, Y. (2011). “Identifikasi Bakteri Termofilik

Amilolitik dari Mata Air Panas Ciengang dan Gunung Darajat, Garut”.

Seminar Nasional Jurusan Pendidikan Biologi UPI.

Van Dover, C. L. (2000). The Ecology of Deep-Sea Hydrothermal Vents. Princeton University Press. 424 pp.

Verkuil, et al. (2008). Principles & Technical Aspects of PCR Amplification. Berlin: Springer Science + Business Media.

Virna. (2010). “Rahasia 4 Ribu Meter di bawah Laut Sangihe”. [Online]. Diakses dari http://www.antaranews.com/berita/213742/rahasia-4-ribu-meter-bawah-laut-sangihe.

Yuwono, T. (2008). “Biologi Molekuler”. Jakarta : Erlangga Retnoningrum, Debbie. 2007. Prinsip Teknologi DNA Rekombinan. Sekolah farmasi. ITB Bandung.

Ward, D.M. (1998). “A natural species concepts for procaryotes”. Current Opinion in Microbiology. 1: 271-277.

Widiastika, G. (2012). “Metode Uji Kualitatif DNA dengan Elektroforesis Gel

agarosa”.

[online].Tersedia:http://ditjenbun.deptan.go.id/bbp2tpsur/images/stories/per benihan/ujikuaitatifdna.pdf [15 Augustus 2014]

(8)

Meli, 2014

Isolasi DNA Genom Bakteri Termofilik Sumber Air Panas Ciengang, Kawah Darajat dan Hydrothermal Vent Kawio

Wilkins, T.A. & Smart, L.B..( 1996). “ Isolation of RNA from Plant Tissue. Di dalam: Krieg, P.A. (ed). A Laboratory Guide to RNA. Isolation, Analysis & Synthesis”. New York: Wiley – Liss.

Wyatt, S.D. & J. K. Brown. (1996). “Detection of Subgroup III Geminiviruses Isolates in Leaf Extract by Degenerate Primer & Polymerase Chain

Reaction”. Phytopatologi. 86:12.1288-1293