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Journal of Life Sciences

Volume 7, Number 2, February 2013 (Serial Number 58)

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J LS

Journal of Life Sciences

Volume 7, Number 2, February 2013 (Serial Number 58)

Contents

Biotechnology and Molecular

97 Impact Assessment of Diesel Oil on the Zhe Oyster (Crassostrea plicatula) Using RAPD Analysis

Anglv Shen, Chunyan Ma and Liu Shao

105 Automatic segmentation of Colon Cancer Cells Based on Active Contour Method: A New

Approach

Jamal Charara, Alaa Hilal, Ali Al Houseini, Walid Hassan and Mohamad Nassreddine

110 Development of Biotechnology for Microbial Synthesis of Gold and Silver Nanoparticles

Tamaz Levan Kalabegishvili, Ivane Giorgi Murusidze, Elena Ivan Kirkesali, Alexander Nikoloz Rcheulishvili, Eteri Nikoloz Ginturi, Eteri Simon Gelagutashvili, Nana Eremey Kuchava, Nanuli Vakhtang Bagdavadze, Dodo Trofim Pataraya, Manana Amiran Gurielidze, Hoi-Ying Holman, Marina Vladimirovna Frontasyeva, Inga Ivanovna Zinicovscaia, Sergey Sergeevich Pavlov and Vasiliy Timofeevich Gritsyna

123 Cloning and Expression of the Serine Carboxypeptidase Gene in Zea mays and Its Antifungal

Activity against Rhizoctonia solani

Li Liu, Xiujing He, Zhiming Zhang, Maojun Zhao, Jing Wang, Haijian Lin, Ya’ou Shen and Guangtang Pan

131 Biosecurity Threats about the Combination of Aerobiology, Morphology and Genetic

Manipulation of Fungal Spores

Manousos E. Kambouris, Aristea Velegraki, George P. Patrinos and Konstantinos Poulas

Botany and Zoology

135 Stability of Cereal Crops to Drought and Saline Stress in Vivo and in Vitro

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145 Diversity and Evolution of Inflorescences in Celastrales

Ivan A. Savinov

153 Morphogenesis of Oil Palm Fruit (Elaeis guineensis Jacq.) in Mesocarp and Endocarp

Development

Hermine Bille Ngalle, Joseph Martin Bell, Georges Franck Ngando Ebongue, Lambert Nyobe, Félix Chancelin Ngangnou and Godswill Ntsefong Ntsomboh

159 Effects of Aqueous Extracts of Seeds of Peganum harmala L. (zygophyllaceae) on 5th Stage

Larvae Locusta migratoria cinerascens (Fabricius, 1781) (Orthoptera: Oedipodinae)

Abdelmadjid Benzara, Abdellah Ben Abdelkrim and Ouassila Khalfi-Habes

165 Genetical Crossbreeding Effect on the Zootechnical Performances of the Domestic Rabbit

(Algeria) x Californian

Mefti Korteby Hakima, Kaidi Rachid, Sid Sihem, Boukhelifa Ahmed, Derradji Billel, Kenchache Youcef and Mareche Hachemi

Interdisciplinary Researches

171 Hyaluronidase Prooffor Endothelial Glycocalyx as Partaker of Microcirculation Disturbances

Alexander Maksimenko, Askar Turashev, Andrey Fedorovich, Anatoly Rogoza and Elena Tischenko

189 Characterization of Fresh Cheese with Addition of Probiotics and Prebiotics

Natália Chinellato Azambuja, Patrícia Blumer Zacarchenco, Luciana Francisco Fleuri, Juliana Cunha Andrade, Izildinha Moreno, Ariene Gimenes Fernandes Van Dender and Darlila Aparecida Gallina

196 Salinity Risk and Management in Tunisian Semi Arid Area

Mohamed Hachicha, Sabri Kanzari, Mohsen Mansour, Omar Jouzdan and Awadis Arselan

202 Biochar for Soil Management: Effect on Soil Available N and Soil Water Storage

Yeboah Edward, Antwi Boasiako Ohene, Ekyem Seth Obosu, Tetteh Francis Marthy and Bonsu Kwasi Offei

210 Factors Associated with Physical-Activity Performance by Older Individuals in a Medium-Sized

City in São Paulo State, Brazil

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Feb. 2013, Vol. 7, No. 2, pp. 97-104

Journal of Life Sciences, ISSN 1934-7391, USA

Impact Assessment of Diesel Oil on the Zhe Oyster

(

Crassostrea plicatula

) Using RAPD Analysis

Anglv Shen1, Chunyan Ma1 and Liu Shao2

1. East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai 200090, China

2. College of Fisheries and Life, Shanghai Ocean University, Shanghai 201306, China

Received: September 10, 2012 / Accepted: December 03, 2012 / Published: February 28, 2013

Abstract: The lethal and sublethal effects of oils on aquatic organisms have been widely investigated, but the potential molecular impacts of oils on aquatic organisms are remaining unclear now. In order to realize the effects of diesel oil on the Zhe oyster, the RAPD (random amplified polymorphic DNA) technique was used. RAPD is a useful assay procedure for the detection of genotoxin-induced DNA damage and mutations. In the present study, the Zhe oysters were exposed to diesel oil at different concentrations and for different exposure periods. The results showed that the DNA band change in RAPD profiles of oysters following diesel oil treatment included loss of normal DNA bands, the appearance of new DNA bands and variations in DNA intensity compared to oysters not exposed to diesel oil. The effects of changes to GTS (genome template stability) were time- and concentration-dependent, the GTS of 10 mg/L was 82.46%, 80.70% and 63.15% in the 8, 16 and 32 days, the GTS of 20 mg/L was 75.44%, 71.93% and 56.14% in the 8, 16 and 32 days, the GTS of 40 mg/L was 73.68%, 70.18% and 56.14% in the 8, 16 and 32 days, respectively. The DNA polymorphisms detected by RAPD analysis could be used as a useful biomarker assay for the detection of genotoxic effects in diesel oil pollution on the oysters, and may be useful for environmental contamination risk assessment.

Key words: Diesel oil, Zhe oyster, RAPD, GTS, DNA damage, biomarker.

1. Introduction

Oysters, known as “milk of the sea”, are considered delicious, nutritious and protein-rich, with a variety of unsaturated fatty acids, amino acids, vitamins and

minerals. The Zhe oyster (Crassostrea plicatula) is an

important member of China’s coastal shellfish population and has a high economic value. It is considered a native species and is widely distributed in China, with the production of this oyster reaching

3.62 × 106 metric tons in 2002, accounting for 37.6%

of the total annual marine molluscan yield [1]. Bivalves (such as oysters) are widely used as sentinel organisms for monitoring the concentration of selected pollutants in coastal environments, such as heavy metals, organo-chlorine compounds and petroleum

Corresponding author: Liu Shao, Ph.D., lecturer, research field: marine environmental science. E-mail: sl317500@163.com.

hydrocarbons have long been recognized as the most deleterious contaminants to biota in the world’s marine and estuarine waters, oysters have become good bio-indicators of environmental pollution in coastal and estuarine ecosystems because they, as filter feeders, bioaccumulate contaminants [2].

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level changes of oil on aquatic organisms, such as micronucleus frequency, DNA repair, cytochrome P4501A, DNA adducts, DNA single strand breaks, microsatellite and AFLP loci were also studied [22-27].

Recently, the RAPD (random amplified polymorphic DNA) assay has been used to detect possible damage in the genomic DNA of organisms in ecotoxicology as a good biomarker [28-34]. The RAPD assay presents some advantages: RAPD assays lie in the PCR-based technique being easy identification of regions of amplification, deletion or rearrangement without prior information about the genome [34]; RAPD assays require very little source material and under certain circumstance and the analysis can also be performed non-destructively which can be useful for the screening of rare or valuable samples; RAPD technique is the high level of the overall sensitivity and relatively cheap and does not require the use of specialized and expensive equipment; RAPD method has the potential to detect a wide range of DNA damage [35]. However, there are no studies of oil contamination which use RAPD technology. In the present study, the principal objectives were to assess the impact of diesel oil contamination on the Zhe oyster in terms of DNA damage.

2. Materials and Methods

2.1 Animals

The oysters used in this study come from

Xiangshan county (29°21′16.50″ S, 121°58′46.72″ W),

Zhejiang province, in the People’s Republic of China. The shell length was 4.03 cm ± 0.11 cm, and the shell width was 2.65 cm ± 0.19 cm. The shell weight was 10.24 g ± 0.54 g, and the oysters have been domesticated two weeks before testing.

2.2 Kinds of Fuel Oils and Preparation of Oil

In the present study, the fuel oil used was No. -20

diesel oil. The oil was supplied by the Institute of

Waterborne Transportation Science, administered by the Ministry of Transportation of the People’s Republic of China.

The authors prepared mixtures of oil from fuel oil samples in a 2,000 mL beaker using 2,000 mg of diesel oil per Liter of clean seawater. The beaker was stirred continuously at a uniform speed for 30 min and then emulsified with an ultrasonic cleaner (DL-720A, made in Shanghai, China) for 8 h. In this way, the authors simulated the effects of oil spilled in the sea. TPH (Total petroleum hydrocarbon) analysis was performed using UV spectrophotometry [36]. The various concentrations were then diluted.

2.3 Experimental Design

The oysters were exposed to four concentrations of mixtures of diesel oil (0, 10.0, 20.0 and 40.0 mg/L) for 32 days. The oysters were fed with chlorella 200 mL a

day, algae concentration was 3.5 × 106 cell/mL. There

were 100 oysters in the 100 L tank per experimental group, 50 L mixtures of oil in each tank, and the temperature of the test was 24 °C ± 2 °C. Test water changed daily, and 10 oysters were taken from each group at 2, 8, 16 and 32 days. The samples were preserved with 95% ethanol and changed after three days. Each treatment was replicated three times.

2.4 DNA Extraction and RAPD Analysis

Genomic DNA was isolated from adductor muscle tissue (approximately 100 mg) using the standard phenol-chloroform method [37]. Subsequently, DNA

was resuspended in a 50 μL TE buffer (2 mL 1 M Tris,

40 mL 0.5 M EDTA, 158 mL ddH2O, pH 8.0) and

stored at -20 °C until use.

The RAPD assays were performed on the GeneAmp PCR System 9700 (Applied biosystems,

Invitrogen, USA) in 25 μL of total volume

containing approximately 2 μL of genomic DNA (10

ng/L), 1 μL primers (10 μmol/L), 1 μL dNTP (2.5

mmol/L each), 0.2 μL Taq DNA polymerase (5

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Impact Assessment of Diesel Oil on the Zhe Oyster (Crassostrea plicatula) Using RAPD Analysis 99

pH 8.3, 15 mmol/L MgCl2, 500 mmol/L KCl, 0.1

mmol/L EDTA, 5 mmol/L DTT, 50% glycerol, 0.1%

Triton X-100), 18.3 μL distilled water. The 30

primers used were 10 bp in length (S1-S30, Sangon Biotech, China). The RAPD protocol consisted of an initial denaturing step of 7 min at 94 °C, followed by 45 cycles at 94 °C for 1 min (denaturation), 37 °C for 1 min (annealing) and 72 °C for 2 min (extension), with an additional extension period of 10 min at 72 °C. For each amplification, a negative control was run for each primer. Reaction mixtures were stored at

4 °C prior to use. 3 μL of each PCR product was

electrophoresed in 1.5% agarose gels containing ethidium bromide for verifying the amplified fragment length with a DNA marker DL2000 (Takara, China). Images were captured using a high-resolution scan and digitalized images were counted directly for RAPD analysis.

2.5 Estimation of GTS (Genomic Template Stability)

Genomic template stability (%) was calculated as

100  (100a/n), where a represented RAPD

polymorphic profiles detected in each sample treated

and n represented the number of total bands in the

control. Polymorphism observed in RAPD profiles included disappearance of a normal band and appearance of a new band in comparison to control RAPD profiles [38]. To compare the sensitivity of this

parameter, changes in this value were calculated as a percentage of their control (100%). In addition, as the sampling time interval of 2 days is too short, there is no calculation of the GTS and compared with others.

3. Results

3.1 TPH Concentrations

Three different oil concentrations were set in this test, 10 mg/L, 20 mg/L and 40 mg/L (the actual concentration of oil), and with the corresponding TPH

were 1.05 × 10-2 mg/L, 2.10 × 10-2 mg/L and 4.20 ×

10-2 mg/L, respectively.

3.2 Effect of Diesel Oil Stress on RAPD Profile

Aimed at verifying the genetic effect of diesel oil contamination, the RAPD analysis was performed on DNA extracted from groups of 10 oysters from each replicate treated with diesel oil at concentrations of 0-40 mg/L. In total, 30 random 10-mer primers (Table 1) were used to amplify genomic DNA samples from the diesel oil-treated and control groups, and only 18 primers generated specific and stable results with a total number of 57 bands.

The RAPD fingerprints showed virtual differences between exposed oysters and control oysters. The changes included both loss and addition of bands compared with the control groups (Fig. 1). For example,

Table 1 Sequences of 30 primers used in this experiment.

No. of primers Sequences (5’→3’) No. of primers Sequences (5’→3’)

S1 GTTTCGCTCC S16 TTTGCCCGGA

S2 TGATCCCTGG S17 AGGGAACGAG

S3 CATCCCCCTG S18 CCACAGCAGT

S4 GGACTGGAGT S19 ACCCCCGAAG

S5 TGCGCCCTTC S20 GGACCCTTAC

S6 TGCTCTGCCC S21 CAGGCCCTTC

S7 GGTGACGCAG S22 TGCCGAGCTG

S8 GTCCACACGG S23 AGTCAGCCAC

S9 TGGGGGACTC S24 AATCGGGCTG

S10 CTGCTGGGAC S25 AGGGGTCTTG

S11 GTAGACCCGT S26 GGTCCCTGAC

S12 CCTTGACGCA S27 GAAACGGGTG

S13 TTCCCCCGCT S28 GTGACGTAGG S14 TCCGCTCTGG S29 GGGTAACGCC

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Fig. 1 RAPD profiles of genomic DNA from adductor muscle of the Zhe oyster exposed to varying concentrations of diesel oil. The RAPD patterns were obtained using 10-mer primers (a) S8, (b) S11, (c) S21, (d) S26, (e) S27, (f) S28, (g) S29, and (h) S30. In (a), (b), (c), (d), (e), (f), (g) and (h), numbers 1-12: control, 20 mg/L diesel oil exposed for 2 days, 40 mg/L diesel oil exposed for 2 days, 10 mg/L diesel oil exposed for 8 days, 20 mg/L diesel oil exposed for 8 days, 40 mg/L diesel oil exposed for 8 days, 10 mg/L diesel oil exposed for 16 days, 20 mg/L diesel oil exposed for 16 days, 40 mg/L diesel oil exposed for 16 days, 10 mg/L diesel oil exposed for 32 days, 20 mg/L diesel oil exposed for 32 days, 40 mg/L diesel oil exposed for 32 days, respectively. M: molecular marker (2,000, 1,000, 750, 500, 250 and 100 bp from top to bottom).

the primer S8 showed the number of disappearing RAPD bands was greater at several concentrations of 10-40 mg/L for different days of exposure (Fig. 1a 8-1, 8-2). The primer S11 showed the number of

disappearing RAPD bands to be greater at several concentrations of 10-40 mg/L for different exposed days (Fig. 1b 11-2, 11-3) as well. On the other hand, some figures showed changes in the addition of bands

(a) (b)

(c) (d)

(e) (f)

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Impact Assessment of Diesel Oil on the Zhe Oyster (Crassostrea plicatula) Using RAPD Analysis 101

compared with the control groups, for instance, the primer S11 showed the number of adding RAPD bands was greater at several concentrations of 40 mg/L exposed for 2 days (Fig. 1a 11-1). Other figures showed the same phenomena, as shown in Fig. 1e, Fig. 1g 29-4 and Fig. 1h 30-2.

3.3 The Correlation between GTS and the

Concentration of Diesel Oil

In Table 2, the modifications in RAPD profiles are shown as a percentage of their control [37]. Changes in the RAPD patterns were expressed as decreases in GTS, a qualitative measure reflecting the obvious change to the number of RAPD profiles generated by the diesel oil-contaminated oysters. GTS values calculated for 18 primers are presented. The GTS value was decreased with the increased time of exposure. For instance, the GTS of 10 mg/L was 82.46%, 80.70% and 63.15% in the 8, 16 and 32 days, respectively. There was significant linear relationship between GTS and the concentration of diesel oil. The

regression equations were y = 98.6x  0.228 (=

0.9734, y was GTS, and the x was concentration), y =

98.664x  0.266 ( = 0.9769) and y = 94.299x

0.434 ( = 0.9023) at 8, 16 and 32 days, respectively.

In addition, although the GTS of 20 mg/L and 40 mg/L were 56.14%, the changes of RAPD profiles

were different, with the appearance of 12 new bands in the 20 mg/L group, and the disappearance of 22 normal bands in the 40 mg/L group (Table 3). This effect will be used to evaluate damage to oysters in cases of oil spillage.

4. Discussion

4.1 Application of RAPD Technique in Ecotoxicology

In the field of ecotoxicology, RAPD studies describe the RAPD changes such as differences in band intensity as well as gain/loss of RAPD bands [35]. The RAPD assay has been used to determine the mutagenic effects of heavy metal pollution on the

model plant (Arabidopsis thaliana), DNA from plants

exposed to heavy metals solution displayed polymorphic bands which were not detectable in DNA of unexposed plants [29]. RAPD assay can be used to qualitatively detect the kinetics of B(a)P-induced

DNA effects in the water flea (Daphnia magna)

exposed to 25 µg/L and 50 µg/L the main changes occurring in RAPD profiles produced by the

population of Daphnia magna was a decrease and

increase in band intensity compared with the control population [30, 31]. DNA changes in barley

(Hordeum vulgare) seedlings induced by cadmium

pollution using RAPD analysis and the results showed

Table 2 Changes of genomic template stability for all primers by diesel oil-contaminated oysters for different times (%).

No. -20 diesel oil concentration (mg/L) 8 d 16 d 32 d

0 100 100 100

10 82.46 80.70 63.15

20 75.44 71.93 56.14

40 73.68 70.18 56.14

Table 3 Changes of total bands in control, polymorphic bands and varied bands in diesel oil-contaminated oysters.

Exposure time (d)

No. -20 diesel oil concentration (mg/L)

0 10 20 40

a + b a b a b a b

8 57 5 5 6 8 8 7

16 57 5 6 10 6 9 8

32 57 11 10 12 13 3 22

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that the changes occurring in RAPD profiles of root tips following Cd treatment included variation in band intensity, loss of normal bands and appearance of new bands compared with the normal seedlings and the genomic template stability (a qualitative measure reflecting changes in RAPD profiles) was significantly affected at the above Cd concentration

[32, 33]. The similar effects was found in rice (Oryza

sativa) contaminated by Cd [34]. Therefore, the

comparison between “unexposed” and “exposed” genomes show that RAPD analysis can be used to evaluate how the environmental pollutants modify the structure of DNA in living organisms.

4.2 RAPD Technique in Diesel Oil Pollution

The RAPD assay presents many advantages and the RAPD assay is very reliable after optimization [31]. Therefore, the RAPD method has the potential to detect DNA damage (e.g. DNA adducts DNA breakage) as well as mutations (point mutations and large rearrangements) [35]. In the present study, the DNA damage in oysters stressed by the diesel oil was very clear, for example, we selected changes in the primers, as indicated by arrows, in comparison to a control group, which showed changes including loss and addition of bands compared with the control groups (Fig. 1). DNA damage leads to the instability of the genomic template. In this way, previous studies demonstrated that the GTS parameter picked up significant effects of B(a)P and Cd exposure [32-34, 38]. The RAPD assay was considered as a semi-quantitative assay [39] and another people use it as a qualitative rather than a quantitative method [31]. One problem is that the number of primers and characteristics of bands of RAPD for statistical significance in GTS. At present, there are 2-14 primers used in RAPD tests, obtaining a total number of bands ranging from 51-180 [30-34, 38]. In the present study, we selected 18 primers in RAPD tests and got 57 bands (Table 3). Therefore, the number of primers is not the most important factor, the total

number of RAPD bands and polymorphic bands are the key factors in the present study. There is a clear tendency of the concentration of pollutants to be proportional to the number of RAPD polymorphic bands. For instance, different polymorphic bands were detected at each concentration of Cd for different primers, and the value of polymorphisms was p (%) = 34.5%, 40.9% and 44.5% for 30, 60 and 120 mg/L Cd, respectively [32]. In the present study, the authors found that not only exposure concentrations but also exposure times of pollutants were proportional to the number and polymorphisms of bands (Table 3). The number of RAPD polymorphic bands is exactly the number of loss and addition of bands compared with the control groups, and is the basis of the GTS calculation.

5. Conclusion

RAPD (Random amplified polymorphic DNA) is a useful assay procedure for the detection of genotoxin-induced DNA damage and mutations. This study showed that the DNA band changes in RAPD profiles of oysters following diesel oil treatment included loss of normal DNA bands, the appearance of new DNA bands and variations in DNA intensity compared to oysters not exposed to diesel oil. This study also showed that the change of GTS showed a dose-dependent and time-dependent tendency to the diesel oil. Therefore, a RAPD assay was quantitative and could be used as an investigation tool for environmental toxicology, as well as a useful biomarker.

Acknowledgments

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Impact Assessment of Diesel Oil on the Zhe Oyster (Crassostrea plicatula) Using RAPD Analysis 103

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[20] J.B. Damásio, C. Barata, A. Munné, A. Ginebreda, H. Guasch, S. Sabater, et al., Comparing the response of biochemical indicators (biomarkers) and biological indices to diagnose the ecological impact of an oil spillage in a Mediterranean river (NE Catalunya, Spain), Chemosphere 66 (2007) 1206-1216.

[21] C. Alonso-Alvarez, C. Pérez, A. Velando, Effects of acute exposure to heavy oil from the Prestige spill on a seabird, Aquatic Toxicology 84 (2007) 103-110.

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and DNA adducts as environmental risk parameters for chronic oil exposure: a laboratory experiment with Atlantic cod, Aquatic Toxicology 51 (2000) 241-258. [23] C.M. Couillard, A microscale test to measure petroleum

oil toxicity to mummichog embryos, Environmental Toxicology 17 (2002) 195-202.

[24] R.F. Lee, J.W. Anderson, Significance of cytochrome P450 system reponses and levels of bile fluorescent aromatic compounds in marine wildlife following oil spills, Marine Pollution Bulletin 50 (2005) 705-723. [25] C. Bolognesi, E. Perrone, P. Roggieri, A. Sciutto,

Bioindicators in monitoring long term genotoxic impact of oil spill: Haven case study, Marine Environment Research 62 (2006) 287-291.

[26] B. Pérez-Cadahía, B. Laffon, V. Valdiglesias, E. Pásaro, J. Méndez, Cytogenetic effects induced by Prestige oil on human populations: The role of polymorphisms in genes involved in metabolism and DNA repair, Mutation Research 653 (2008) 117-123.

[27] P. Jaime, H. Quesada, E. Rolán-Alvarez, A. Caballero, Genetic impact of the Prestige oil spill in wild populations of a poor dispersal marine snail from intertidal rocky shores, Marine Pollution Bulletin 56 (2008) 270-281.

[28] C.W. Theodorakis, L.R. Shugart, Genetic ecotoxicology Ⅱ: population genetic structure in mosquitofish exposed in situ to radionuclides, Ecotoxicology 6 (1997) 335-354. [29] C. Conte, I. Mutti, P. Puglisi, A. Ferrarini, G. Regina, E.

Maestri, et al., DNA fingerprinting analysis by a PCR based method for monitoring the genotoxic effects of heavy metals pollution, Chemosphere 37 (1998) 2739-2749.

[30] F.A. Atienzar, A.J. Evenden, A.N. Jha, M.H. Depledge, Use of the random amplified polymorphic DNA (RAPD) assay for the detection of DNA damage and mutations: Possible implications of confounding factors, Biomarkers 7 (2002) 94-101.

[31] F.A. Atienzar, A.N. Jha, The random amplified polymorphic DNA (RAPD) assay to determine DNA

alterations, repair and transgenerational effects in B(a)P exposed Daphnia magna, Mutation Research 552 (2004) 125-140.

[32] W. Liu, P.J. Li, X.M. Qi, Q.X. Zhou, L. Zheng, T.H. Sun, et al., DNA changes in barley (Hordeum vulgare) seedlings induced by cadmium pollution using RAPD analysis, Chemosphere 61 (2005) 158-167.

[33] W. Liu, L. Zheng, P.J. Li, X.M. Qi, Q.X. Zhou, T.H. Sun, Effects of cadmium stress on DNA polymorphism of genome in barley seedlings, Journal of Agro-Environment Science 25 (1) (2006) 19-24. (in Chinese)

[34] W. Liu, Y.S. Yang, Q.X. Zhou, L.J. Xie, P.J. Li, T.H. Sun, Impact assessment of cadmium contamination on rice (Oryza sativa L.) seedlings at molecular and population levels using multiple biomarkers, Chemosphere 67 (2007) 1155-1163.

[35] F.A. Atienzar, A.N. Jha, The random amplified pokymorphic DNA (RAPD) assay and related techniques applied to genotoxicity and carcinogenesis studies: A critical review, Mutation Research 613 (2006) 76-102. [36] L.S. Shang, Q. Sun, H.Z. Xu, Study on the determination

of petroleum hydrocarbon in mussels by UV-spectrophotometry, Marine Environmental Science 16 (1) (1998) 62-65. (in Chinese)

[37] J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular Cloning: A Laboratory Manual, 3rd ed., Cold Spring Harbor Laboratory Press, NY, 2001.

[38] F.A. Atienzar, M. Conradi, A.J. Evenden, A.N. Jha, M.H. Depledge, Qualitative assessment of genotoxicity using random amplified polymorphic DNA: Comparison of genomic template stability with key fitness parameters in Daphmia magna exposed to benzo[a]pyrene, Environmental Toxicology and Chemistry 18 (1999) 2275-2282.

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Feb. 2013, Vol. 7, No. 2, pp. 105-109

Journal of Life Sciences, ISSN 1934-7391, USA

Automatic segmentation of Colon Cancer Cells Based

on Active Contour Method: A New Approach

Jamal Charara, Alaa Hilal, Ali Al Houseini, Walid Hassan and Mohamad Nassreddine.

Department of Physics and Electronics, Faculty of Sciences I, Lebanese University, Beirut, Lebanon

Received: September 28, 2012 / Accepted: December 7, 2012 / Published:February 28, 2013.

Abstract: Automatic interpretation of the images of colon cell biopsies requires automatic segmentation of these cells in the image obtained. The active contour method for image segmentation is a well known method for automatic detection of the cell contour. However, the application of this method on colon cell images was not effective. In this paper, the authors have proposed a new technique to reduce the analysis time needed to detect cells in a given image. This technique is based on the active contour method but now using a progressive division of the dimensions of the image to achieve convergence. The model proposed succeeded in detecting cells whose boundaries are not necessarily defined by a gradient. The initial curve can be anywhere in the image, and interior contours can be automatically detected. The developed algorithm was successfully applied on textured multispectral images of three types of cells, including benign hyperplasia (BH), intraepithelial neoplasia (IN), and carcinoma (Ca) cells.

Key words: Active contours, multispectral image, texture, segmentation.

1. Introduction

Medical images obtained microscopically are

important tools in medical diagnosis. Since colon cancer, like any other cancer, is characterized by

abnormal cellular proliferation, seeking abnormalities inside microscopic images from biopsies, such as elliptical non-regular cancer cells or non-natural

contrast, is of paramount interest. However, diagnosis based on observation of medical images would be

largely accelerated if the manual search of abnormalities can be replaced by an automatic procedure. The majority of methods used to classify

cancerous cells use morphological image processing, particularly the shapes of the cells inside images. The

effectiveness of an automatic search method is generally assessed by its capacity to analyze and interpret a large number of images in a short time. The

main drawback of these approaches is the long analysis time [1].

The active contour (snake) method is a very

effective technique for rapid segmentation of cancer

cells in the image. It is based on color intensity and can be applied on sequences of objects in the image.

Nevertheless, segmentation of colon cancer cells

possessing irregular shapes within a multispectral

image was not efficient with the active contour

[2-4].

The objective of the present paper was to develop

a new approach aiming to reduce the time necessary

to detect cells in a given image. This approach was

derived from the active contour method but now using a progressive division of the dimensions of the

image to achieve convergence. Three types of cells

were utilized to assess the efficiency of our

segmentation model, including benign hyperplasia

(BH), intraepithelial neoplasia (IN) that is a

precursor state for cancer, and carcinoma (Ca) that

corresponds to abnormal tissue proliferation (cancer).

2. Materials and Methods

2.1 Active Contour Model

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Automatic Segmentation of Colon Cancer Cells Based on Active Contour Method: A New Approach

109

(a) (b) (c)

Fig. 8 Time consumption and segmentation results for the three types of colon cells: (a) BH: 164.74 s; (b) IN: 136.98 s and (c) Ca: 139.87 s.

minutes per image. Second, the segmentation of colon cancer cells has become fully automated. Therefore, the proposed model allows accurate and efficient segmentation of images containing distinct objects in a very short time. The approach is very simple and exhibits attractive results. This method is useful in the

automatic segmentation between different histopathological images and thus allowing a faster segmentation of microscopic bio-images.

Acknowledgments

This work was supported by grants from the Doctoral School of Sciences & Technology at the Lebanese University.

References

[1] C.A.B. Castano, J.S. Fraga, S. Fernandez, A. Gruber, L.

Costa, Biological shape characterization for automatic image recognition and diagnosis of protozoan parasites of the genus Eimeria, Pattern Recognition 40 (2007) 1899-1910.

[2] T.E. Schneider, Automated classification of analysis and reference cells for cancer diagnostics in microscopic images of epithelial cells from the oral mucosa, Acta Polytechnica 47 (2007) 86-90.

[3] G.D. Giannoglou, Y.S. Chatzizisis, V. Koutkias, I. Kompatsiaris, M. Papadogiorgaki, V. Mezaris, et al., A novel active contour model for fully automated segmentation of intravascular ultrasound images: In vivo validation in human coronary arteries, Computers in Biology and Medicine 37 (2007) 1292-1302.

[4] R. Verdu, J. Morales, R. Gonzalez, L. Weruaga, Convergence analysis of active contours, Image and Vision Computing 26 (2008) 1118-1128.

[5] R.M. Haralick, K. Shanmugam, I. Dinstein, Textural features for image classification, IEEE Transactionson Systems, Man and Cybernetics 3 (1973) 610-621. [6] T. Chan, L. Vese, Active contours without edges, IEEE

Transactions on Image Processing 10 (2001) 266-277. [7] D. Mayumi, U. Sabino, L.F. Costa, E.G. Rizatti, M.A.

Zago, A texture approach to leukocyte recognition, Real-Time Imaging 10 (2008) 205-216.

[8] M.A. Roula, A. Bouridane, P. Miller, Aquadratic classifier based on multi-spectraltexture features for prostate cancer diagnosis, in: Proceedings of the 7th International Symposium on Signal Processing and its Applications, 2003, pp. 37-40.

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Journal of Life Sciences, ISSN 1934-7391, USA

Development of Biotechnology for Microbial Synthesis

of Gold and Silver Nanoparticles

Tamaz Levan Kalabegishvili1, 2, Ivane Giorgi Murusidze2, Elena Ivan Kirkesali1, Alexander Nikoloz

Rcheulishvili1, Eteri Nikoloz Ginturi1, Eteri Simon Gelagutashvili1, Nana Eremey Kuchava1, Nanuli Vakhtang

Bagdavadze1, Dodo Trofim Pataraya3, Manana Amiran Gurielidze3, Hoi-Ying Holman4, Marina Vladimirovna

Frontasyeva5, Inga Ivanovna Zinicovscaia5, Sergey Sergeevich Pavlov5 and Vasiliy Timofeevich Gritsyna6

1. Department of Biological System Physics, E. Andronikashvili Institute of Physics, Javakhishvili State University, Tbilisi 0177,

Georgia

2. Ilia State University, Institute of Applied Physics, Tbilisi 0162, Georgia

3. S. Durmishidze Institute of Biochemistry and Biotechnology of N.L.E. Georgian Agrarian University, Tbilisi 0159, Georgia

4. Department of Ecology, Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory, Berkeley 94720,

United States

5. Department of Nuclear Physics, Joint Institute for Nuclear Research, Dubna 141980, Russia

6. Departement of Solid State Physics, V.N. Karazin Kharkiv National University, Kharkiv 01077, Ukraine

Received: September 28, 2012 / Accepted: December 07, 2012 / Published: February 28, 2013.

Abstract: Several bacterial strains of Actinomycetes belonging to Streptomyces and Arthrobacter genera for the first timewere used to study the biotechnology of synthesis of gold and silver nanoparticles. The experimental conditions of gold and silver nanoparticles production by the cells of studied strains in aqueous chloroauric acid (HAuCl4) and in silver nitrate (AgNO3) solutions, respectively,

were determined. Concentration and time-dependences of nanoparticle formation were investigated. The complex of optical and analytical methods was used for testing the gold and silver nanoparticles in the bacterial biomass. The TEM (Transmission Electron Microscopy) and XRD (X-ray Diffraction) data in all cases demonstrated the presence of crystals with fcc (face centered cubic) structure. The results obtained show that the Actinomycetes are capable of producing gold and silver nanoparticles of spherical shape extracellularly when exposed to suitable compounds. The particle size distribution shows that the sizes of nanoparticles are in the range of 5 nm to 80 nm. The biomass obtained may be used for industrial as well as medical and pharmaceutical purposes.

Key words: Microbial synthesis, nanoparticles, gold, silver, biotechnology.

1. Introduction

In recent years, the microbial technologies of metal nanoparticles production have received great attention in materials science and industry [1-3]. A large number of microorganisms are characterized by their affinity with metal ions and their tolerance to high metal concentrations. Microorganisms often exhibit

Corresponding author: Marina Vladimirovna Frontasyeva, Ph.D., research field: application of NAA for life sciences and material science. E-mail: marina@nf.jinr.ru.

defense mechanisms that contribute to their survival in aggressive environments containing harmful metallic compounds. The same mechanism must be responsible for their ability to produce metallic nanoparticles when exposed to such environments [4].

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Development of Biotechnology for Microbial Synthesis of Gold and Silver Nanoparticles 111

with metal ions in the aqueous solutions which result in extracellular inorganic precipitation [6, 7]. Anionic bacterial surfaces interact with metal cations, which produce a negative charge density throughout the wall and then intracellular binding of metals [8].

Various microorganisms (bacteria, yeast, fungi) are known for their effectiveness and flexibility in producing gold [9-14] and silver [8, 9, 15, 16] nanoparticles. Gold and silver nanoparticles have potential applications in electronics, information technology, catalysis, medicine, pharmacology, chemical sensing, biosensing and photonics. In medicine they have shown therapeutic potential in oncology, cardiology, immunology, neurology and endocrinology [4, 17, 18].

Gold nanoparticles possess stability, oxidation resistance and biocompatibility. Due to their optical and chemical properties and high infrared phototherapy potential, they may be used for early diagnosis and treatment of cancer. The use of precisely engineered gold nanoparticles as anticancer agents allows direct treatment of diseased cells with reduced damage to healthy cells [19, 20].

Silver nanoparticles are characterized by excellent biocompatibility and low toxicity for man, but at the same time silver at low concentrations is well known to exhibit toxicity to a wide range of bacteria, virus and other (about 650) eukaryotic microorganisms [21, 22]. Silver is also an effective antimicrobial agent. High synergistic activity of silver nanoparticles and antibiotics has been observed.

Thus both gold and silver nanoparticles have a large field of application for many purposes. However, current conventional nanotechnology causes environmental pollution due to the toxicity of the reagents used [1]. Therefore, there is a great need to develop new alternative, easy and eco-friendly methods of producing gold and silver nanoparticles using bacteria and to search for new effective microbial strains.

The actinomycetes are a widespread group of

Gram-positive bacteria. Among microorganisms, actinomycetes (actinobacteria) appear to be a very specific taxonomic group responsible for the biosynthesis of a number of biologically active compounds (enzymes, amino acids, vitamins, antibiotics, etc.). Actinobacteria are distinguished from other bacteria by their morphology and by their G + C rich genome. Though some actinobacteria display pleomorphic or even coccoid elements, characteristically they form filamentous mycelium and may produce spores that are easily detached and may become airborne when disturbed [23].

The ability of biosorption and bioremediation shown by actinomycetes could be useful in heavy metal removal by the valence change of metal ions. They are classified as prockaryotes and may be easily manipulated genetically to control sizes and polydispersity of the resulting nanoparticles [7, 8].

Actinomycetes-mediated chemistry has many advantages for the synthesis of gold and silver nanoparticles [11, 12, 24, 25]. Terrestrial

actinobacteria, especially Streptomyces genera are rich

sources of biologically active products and are being extensively used for industrial production of pharmaceuticals. Numerous actinomycetes have been isolated from different environments—soils, compost, marine sediments, rocks, water etc. Antimicrobial and antifungal activity of actinomycetes is well established

two-third of microbial-produced antibiotics belongs

to actinomycetes. They are effective in the treatment of many antibiotic-resistant pathogens. Antibiotics produced by actinobacteria are widely used in human and veterinary medicine, and in agriculture. This group of microorganisms also contributes to soil fertility regeneration and polluted soil cleanup by degrading the carbon skeleton of toxic organic compounds.

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studies of several new strains of actinomycetes for developing methods of producing gold and silver nanoparticles are presented. Some results of earlier investigations are presented in Refs. [26, 27]. Strains

of microorganisms belonging to Streptomyces and

Arthrobacter genera have been studied as possible “nanofactories” for the development of clean and nontoxic methods of the synthesis of silver and gold nanoparticles. A few different analytical and spectral methods have been used for examining gold and silver nanoparticles. The obtained results are discussed to evaluate the ability of the studied strains to produce gold and silver nanoparticles.

2. Material and Methods

2.1 Materials

Among many geographical regions of the planet, the South Caucasus has particularly attracted the attention of bioprospectors. There are 14 different soil-climatic zones on the southern slopes of the Caucasus with an average annual temperature between 5-25 °C. Georgia is a country covering

69,000 km2, occupying more than 80% of the South

Caucasus. This area is characterized by extreme microbial and plant biodiversity. The study of biodiversity of the microorganisms, their distribution and classification into definite groups and species is performed on the bases of an in-depth study of their biological properties. Special interest is focused on adaptation mechanisms of the microorganisms to extreme environment. Among extremophilic microorganisms atinomycetes-actinobacteria in particular, widely distributed in nature, are species of a great interest [28]. The distribution of extremophilic actinomycetes in various types of soils, rocks and rhizosphere of Georgia has been studied. Among extremophilic actinomycetes isolated from various types of soils of Georgia, there were 49% of halophiles, 27% of alkaliphiles and 24% of thermophiles [29, 30].

The new strain Streptomyces spp. 211A (alcaliphilic

actinomycetes) was isolated from the Cinnamonic calcareous soil of Sagarejo region in Georgia using the method of dilution [30]. Incubation was performed in a thermostat at 26-28 °C for 14 days. Pure colonies were characterized for their morphological and physiological characteristics by various biochemical tests. The growth ability of the culture was studied in different synthetic and organic nutrient media. Pridham’s method was used to study the carbon source uptake ability [31]. Fedorov’s [32] nutrient medium was used to establish the uptake of different sources of nitrogen. The hydrocarbon absorption ability of actinomycetes was determined according to their growth intensity. Antagonistic properties were

studied by the agar block method [33]. The protease

activity was determined by Anson’s method, modified by Petrova [34]. Actinomycete identification was performed according to Krasilnikov and Bergey’s

Manuals [35]. The strain Streptomyces spp. 211A

develops long branched straight hyphae. Aerial

mycelium is white-violet coloured, coloniesdark

violet, nutrient mediumbrownish. The culture is

extremophilic, specifically, alkaliphilic. In experiments the cells were grown aerobically at pH 7- 8, 28-30 °C in 500 mL Erlenmeyer flasks in the liquid

medium Gauze-1 [29]: K2HPO4 (0.05%), MgSO4

(0.05%), NaCl (0.05%), KNO3 (0.1%), FeSO4·7H2O

(0.001%), starch (2%), east extract (0.03%). The culture was grown with continuous shaking on a

shaker (200 g) at 30°C for 10 days.

All chemicals used in the experiment were ACS-reagent grade, produced by Sigma (St. Louis, MO, USA).

The bacterial strain Streptomyces glaucus 71MD

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Development of Biotechnology for Microbial Synthesis of Gold and Silver Nanoparticles 113

actinomycete Streptomyces glaucus 71MD is:

K2HPO4 (0.05%), MgSO4 (0.05%), NaCl (0.05%),

KNO3 (0.1%), FeSO4·7H2O (0.001%), glucose (2%),

yeast extract (0.03%), pH 7.5. In this nutrient medium the bacteria were grown in 250 mL Erlenmeyer flasks under aerobic conditions with permanent shaking of

the suspension and at the temperature of 28-30 oC, pH

= 7-8. The biomass was harvested by centrifugation. Two Gram-positive aerobical bacterial strains

belonging to Arthrobacter generaArthrobacter

globiformis 151B and Arthrobacteroxydans 61B were isolated from the basalt rocks collected from the Kazreti region in the Republic of Georgia. In both cases incubation was carried out at 20-30 °C, pH 7-12 for 15-17 days. The pure colonies were tested to examine their morphological and physiological characteristics. The growth ability of the bacteria was studied in different synthetic and organic media. Antagonistic properties towards other Gram-positive bacteria, fungi and yeasts were not observed. The bacteria were grown aerobically in the following nutrient medium: 10 g of glucose, 10 g of peptone, 1 g of yeast extract, 2 g of caseic acid hydrolysate, 5 g of NaCl, and 1 L of distilled water. Bacterial cells were grown in 250 mL Erlenmeyer flasks as a suspension at 21 °C being shaken continuously for 5 days.

After cultivation in all cases mycelia (cells) were separated from the culture broth by centrifugation (12,000 g) for 20 min, and then the biomass was washed three times with sterile distilled water. The harvested mycelial biomass (2-3 g of wet mycelia) was resuspended in 250 mL Erlenmeyer flasks with

100 mL of 10-3 M aqueous chloroauric acid (HAuCl4)

solution for synthesis of gold nanoparticles and

aqueous silver nitrate (AgNO3) solution for synthesis

of silver nanoparticles. The resulted mixtures were put again into the shaker at 28-30 °C (200 g) for different periods of time (1-12 days).

For UV-Vis (Ultraviolet-Visual) spectral analysis and TEM (Transmission Electron Microscopy) of the suspension samples were taken after different time

intervals. For these studies, both the suspension and supernatant obtained after centrifugation were used. For SEM (Scanning Electron Microscopy), X-ray diffraction, equilibrium dialysis, AAS (Atomic Absorption Spectrometry) and NAA (Neutron Activation Analysis) analysis, the bacterial cells were harvested by centrifugation at 12,000 g for 20 min and this wet biomass was placed in an adsorption-condensation lyophilizer and dried [36].

2.2 Methods

2.2.1 UV-Vis Spectrometry

The UV-Vis (Ultraviolet-Visual) spectra of the samples were recorded by a spectrophotometer “Cintra 10” (GBC Scientific Equipment Pty Ltd.,

Australia) with a wavelength range of 190-1,100 nm.

2.2.2 XRD (X-ray Diffraction)

XRD measurements were made with a Dron-2.0 diffractometer. The BCV-23 X-ray tube with the Cu

anode (CuKα: λ = 1.54178 Å) was used as a source of

radiation; the Ni grid with a width of 20 µm was used for filtration of the radiation; the rate of the detector

was 2o/min; the interval of intensity was 1,000

pulses/min and the time constant was 5 s.

2.2.3 TEM (Transmission Electron Microscopy) TEM (Transmission Electron Microscopy) was performed using the JEOL SX-100 equipment (Japan) operating at 100 kV. The TEM studies were done at 50,000× magnification. The samples were prepared by placing a drop of solution with the gold nanoparticles on carbon-coated TEM grids. The films on the TEM grids were allowed to dry at room temperature before analysis.

2.2.4 SEM (Scanning Electron Microscopy)

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with the energy-dispersive X-ray spectrometer (EDAX, USA). The acquisition time ranged from 60 s to 100 s, and the accelerating voltage was 20 kV [37].

2.2.5 EDAX (Energy-Dispersive X-ray Analysis) To identify different elements associated with the sample specimen the “built-in” spectrometer called an EDAX spectrometer was used. EDAX is an analytical technique which utilizes X-rays that are emitted from a specimen when bombarded by an electron beam to identify the elemental composition of the specimen. The EDAX X-ray detector measures the number of emitted X-rays versus their energy. Microprobe analysis of gold nanoparticles clusters was conducted with EDAX spectrometer, USA. The acquisition time ranged from 60 s to 100 s, and the accelerating voltage was 20 kV.

2.2.6 AAS (Atomic Absorption Spectrometry) Flame AAS with a “Beckman-495” spectrometer was used for gold and silver determination in the experimental samples. Measurement was carried out at the wavelength of the gold resonance line = 242.8 nm.

2.2.7 NAA (Neutron Activation Analysis)

The gold and silver concentrations as well as the elemental content of samples were determined using NAA at the reactor IBR-2 of the Frank Laboratory of Neutron Physics of the Joint Institute for Nuclear Research (Dubna, Russia). The experimental equipment and irradiation conditions of samples are described elsewhere [38]. The concentrations of elements based on short half-life radionuclides were determined by irradiation for 60 s under a thermal

neutron fluency rate of approximately 1.6 × 1013

n·cm-2·s-1. The long half-live isotopes were determined

using a cadmium-screened irradiation channel under a resonance neutron fluency rate of approximately 3.31

× 1012 n·cm-2·s-1. The samples were irradiated for 5

days, repacked and then measured twice after decays of 4 days and 20 days.

The counting time varied from 30 min to 1.5 h. The gold content was determined with the 411.8 keV

γ-line of 198Au. The silver content was determined

using the 657.7 keV γ-line of 110mAg. The NAA data

processing and determination of element concentrations were performed using Genie 2000 software [39].

3. Results and Discussion

At first the UV-Vis spectrometry was used for testing of bacterial samples with gold and silver nanoparticles. The gold SPR (surface plasmon resonance) peak at ~ 530 nm in UV-Vis absorption spectra corresponds to aggregation in the solutions of the gold nanoparticles which are formed by means of the gold ion reduction from Au (III) to Au (0) by biomolecules, proteins and enzymes on the surface of bacteria cells. The spectra in silver cases exhibit the appearance of an absorption peak at 425 nm, which is characteristic of silver nanoparticles and corresponds to silver reduction from Ag (I) to Ag (0) [32].

As is known, absorption bands of nanocluster plasmons strongly depend on the particle sizes, the dielectric constant of the medium and surface-adsorbed species. Using Maxwell’s electromagnetic theory to explain the interaction of light with spherical particles, the size of which is of the order of the light wavelength or smaller, Mie [41] assumes that the shape of plasmon resonance absorption bands depends on the particle nature. According to Mie’s theory, a single SPR band is expected in the adsorption spectra of spherical isotropic nanoparticles, whereas anisotropic particles could give rise to two or more SPR bands depending on the shape of particles [42]. The intensity of the peaks for nanoparticles of definite sizes increased as a function of time of reaction.

In the preliminary investigations optimal concentrations of gold and silver compounds for synthesis of nanoparticles were determined. Dose-dependence of absorbance versus chloroauric

acid and silver nitrate concentrations 10-2-10-4 M in

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Development of Biotechnology for Microbial Synthesis of Gold and Silver Nanoparticles 115

cases was near 10-3 M. At a concentration of 10-2 M

the sizes of nanoparticles were higher than 100 nm and the peaks were not observed. In Ref. [43], it is hypothesized that the number of active objects on the surface of bacteria cells that were involved in the synthesis was not sufficient for the reduction of metal ions at higher concentrations. Consequently, the synthesis process depended on the metal concentration as well as on the number of the cells in solution. This differential response indicates the possibility of custom designed nanoparticles by varying cell number and metal concentration in solution.

In addition, in nutrient medium, some organic compounds in the cell cultivation may be used for activation of cell growth and synthesis processes. Using NAA it was demonstrated that in the synthesis

of silver nanoparticles by actinomycete Streptomyces

glaucus 71MD the addition of glucose in the nutrient medium increases the production of nanoparticles by 3 times as compared with the starch. The SEM image in Fig. 1 demonstrated intensive production of silver

nanoparticles in biomass of Streptomyces glaucus

71MD.

UV-Vis spectra of gold nanoparticles for all the bacteria studied have better identified SPR peaks at 530 nm than the peaks of silver nanoparticles at 425 nm. In Fig. 2, (a) the dose-dependence for silver

nanoparticles synthesis by actinomycete Streptomyces

spp. 211A and (b) the TEM image are presented. As can be seen from the image, production of silver

nanoparticles at a silver nitrate concentration of 10-3 M

takes place, but the surface plasmon peak of silver at

425 nm is not well separated which may be caused by the dispersed sizes of the nanoparticles, dielectric properties of the medium and the poor state of surface-adsorbed species because of the antibacterial properties of silver.

The silver nanoparticles were also synthesized

using Arthrobacter globiformis 151B (Fig. 3). For the

measurement of UV-Vis spectra the suspensions in some cases were diluted with distilled water 3-4 times.

(a) (b)

Fig. 1 The SEM images of silver nanoparticles formed in Streptomyces glaucus 71MD cells after 5 days treatment by silver nitrate (a) with glucose and (b) with starch.

Fig. 2 (a) The dose-dependence for silver nanoparticles synthesis by actinomycete Streptomyces spp. 211A and (b) the TEM image of silver nanoparticles in biomass Streptomyces spp. 211A.

The spectra were observed (a) in the suspension that was diluted 4 times as well as (b) in supernatant obtained after centrifugation of the suspension interacted with silver nitrate for 5 days. The UV-Vis spectra in Fig. 3 show that silver nanoparticles formed in the supernatant have a good monodispersity, but their number is 2.5 times less. So, in some cases, the supernatant may be successfully used for the production of nanoparticles.

In the Streptomycetes genera strains Streptomyces

spp. 211A and Streptomyces glaucus 71MD intensive

production of gold nanoparticles was observed (Fig. 4). For example in Fig. 4 the UV-Vis absorption spectra

of gold nanoparticles in (a) Streptomyces glaucus

71MD suspension treated with HAuCl4 for 40 h and (b)

in the same suspension diluted 4 times are given. In all TEM images the diffraction patterns correspond to the fcc (face centered cubic) structure of gold and silver

nanoparticles. For example, Fig. 5a shows TEM

image and diffractogram of Au nanoparticles

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synthesized in biomass of Arthrobacter oxydans 61B

treated by HAuCl4 for 12 days. The particle size

histograms for the samples studied show that the sizes of gold and silver nanoparticles are in the range of 5 nm to 80 nm, with an average of 20-25 nm. Example

of the histogram for Arthrobacter oxydans 61B is

presented in Fig. 5b.

The XRD data for gold nanoparticles synthesized by Arthrobacter oxydans 61B treated with chloroauric acid for 12 days confirm the presence of fcc structure

Fig. 3 The UV-Vis absorption spectra for silver nanoparticles synthesized by Arthrobacter globiformis 151B (a) in the suspension diluted 4 times and (b) in supernatant.

Fig. 4 The UV-Vis absorption spectra for gold nanoparticles (a) in Streptomyces glaucus 71MD suspension treated with HAuCl4 for 40 h and (b) in the same suspension diluted 4 times.

Fig. 5 The TEM image and the size histogram of gold nanoparticles synthesized in Arthrobacter oxydans 61B treated by HAuCl4 for 12 days.

(Fig. 6). The diffraction pattern shows the amorphous structure of gold nanoparticles. However, a number of Bragg reflections corresponding to the fcc structure of gold are also seen here: four characteristic peaks (111), (200), (220) and (311). In cases of silver nanoparticles synthesis the same characteristic peaks corresponding to the fcc structure of elemental silver were observed. The results obtained clearly show that gold and silver nanoparticles, formed by bacterial reduction of ions, are crystalline in nature and they are generally produced extra cellularly.

The Scherrer equation was used for an approximate assessment of the sizes of nanoparticles using the broadening of interference peak of gold (111) on the diffractogram (Fig. 6):

(a) (b)

(a) (b)

(a)

(25)

Development of Biotechnology for Microbial Synthesis of Gold and Silver Nanoparticles 117

d = /β cos θ

where K is the shape factor, for cubic crystals it is

0.9-1; λis x-ray wavelength, for CuKαλ = 1.54178 Å;

βis the line broadening at half the maximum intensity

in radians; θ is the Bragg angle; and d is the size of

nanoparticles in nm. It is important to realize that the Scherrer formula is applicable to grains less than

0.1 μm [44, 45]. For an approximate assessment of

the size of nanoparticles, the (111) interferential

maximum was used. In this case θ = 38o. The

calculations were carried out taking into account only

instrumental broadening of β (≈ 0.3o) without

evaluation of crystal defects on the maximums shape. The results obtained show that the size of gold nanoparticles is about 22 nm, confirming the range of size determined using the TEM image.

Fig. 7 presents the SEM image of gold nanoparticles

formed by actinomycetes Streptosporangium spp. 94A

cells after interacting with chloroauric acid for 3.5 days. The SEM image of silver nanoparticles in the

biomass of Streptomyces glaucus 71MD was

presented in Fig. 1. Since the studied samples are non-conducting, they were visualized in the natural environment (ESEM) mode. The SEM images illustrate that the extra cellular production of gold and silver nanoparticles in all experiments takes place, most of the particles formed are spherical and do not create big agglomerates.

Fig. 6 The XRD difractogram for gold nanoparticles synthesized by Arthrobacter oxydans 61B treated with chloroauric acid for 12 days.

Fig. 7 The SEM image of the actinomycetes Streptosporangium spp. 94A cells after interacting with chloroauric acid for 3.5 days.

The EDAX spectra proved the presence of (a) gold

nanoparticles in Arthrobacter globiformis 151B cells

treated with HAuCl4 solution for 10 days and (b)

silver nanoparticles in Streptomyces spp. 211A cells

treated with AgNO3 solution for 5 days (Fig. 8). Nine

peaks of Au were observed for the biomass of

Arthrobacter globiformis 151B (Fig. 8a). Signals from C, O, K, P, Al and Ca atoms were also recorded. These signals are likely to be due to X-ray emission from the proteins and enzymes present in the cell wall of the biomass. Four peaks of Ag were observed

for the biomass of Streptomyces spp. 211A (Fig. 8b).

The signals from C, O, and P atoms were also recorded.

(26)

Fig. 8 The EDAX spectra of (a) gold nanoparticles in Arthrobacter globiformis 151B and (b) silver nanoparticles in Streptomyces spp. 211A.

(a)

(27)

Development of Biotechnology for Microbial Synthesis of Gold and Silver Nanoparticles 119

The capacity of the adsorbent and the equilibrium relationships between adsorbent and adsorbate are described by Freundlich adsorption isotherms:

Cb = KCt1/n

where Cbis the concentration of the metal adsorbed, Ct

is equilibrium concentration of the metal ion in the

solution, K and n are empirical constants, which may

be characterized as the biosorption constant and sorptive capacity, respectively.

In Fig. 9 biosorption isotherms for chloroauric acid

solution and Streptomyces spp. 211A cells

(A—homogenized cells, and B—particulate homogenized cells (insert)) are presented. Each dot is the average of three independent values, and the standard deviation is < 13%.

By means of Freundlich isotherms the biosorption

constants (K) and the sorptive capacity (n) were

determined:

(1) K = 4.11 × 10-4, n = 3.84. (goldStreptomyces

spp. 211Ahomogenized cells);

(2) K = 1.47× 10-4,n = 4.55. (goldStreptomyces

spp. 211Aparticulate homogenized cells).

As can be seen, the biosorption constant of homogenized cells is greater than that of particulate homogenized cells for which, on the contrary, sorptive capacity is greater.

The results obtained show that cell homogenization increases the surface of bacterial cells that increases the probability of nanoparticle formation.

The roles of processes, which take place on cell surfaces also during the microbial synthesis, are revealed by the results of NAA and AAS. Examples of analytical determination (using AAS and NAA) of gold and silver total concentrations in the bacterial

biomass for Streptomyces spp. 211A are given in

Fig. 10.

The data obtained by NAA (Fig. 10a) illustrate that during the first day the metal concentration increases rapidly and then does not change significantly for a few days. In the first “rapid” phase, the metal ions are mainly adsorbed onto the surface of microorganisms

Fig. 9 The linearized Freundlich adsorption isotherms for gold Streptomyces spp. 211A cells (A: homogenized cells; and B: particulate homogenized cells).

Fig. 10 The total gold concentrations in biomass Streptomyces spp. 211A determined by (a) NAA and by (b) AAS.

(a) (b)

St r e pt om yce s

spp. 2 1 1 A

Log Ct ot a l

L

o

g

C

Gambar

Fig. 5  (a) Th64 pixels; (b)size 64 × 64 phe three types ) Segmentationpixels. of colon cells an results of thare reduced to he three image64 × es of
Fig. 5  The TEM image and the size histogram of gold  treated by HAuClnanoparticles synthesized in Arthrobacter oxydans 61B 4 for 12 days
Fig.  7  The SEM image of the actinomycetes Streptosporangium spp. 94A cells after interacting with chloroauric acid for 3.5 days
Fig. 8  The EDAX spectra of (a) gold nanoparticles in  Streptomyces Arthrobacter globiformis 151B and (b) silver nanoparticles in spp
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